Clone SD21168 Report

Search the DGRC for SD21168

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:211
Well:68
Vector:pOT2
Associated Gene/TranscriptCG18278-RA
Protein status:SD21168.pep: gold
Preliminary Size:1743
Sequenced Size:1779

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18278 2003-01-01 Sim4 clustering to Release 3
CG18278 2005-01-26 Blastp of sequenced clone
CG18278 2008-04-29 Release 5.5 accounting
CG18278 2008-08-15 Release 5.9 accounting
CG18278 2008-12-18 5.12 accounting

Clone Sequence Records

SD21168.complete Sequence

1779 bp (1779 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021205

> SD21168.complete
TAGAGTTTGTCCTATTTCGGTTGGCCATTGGCTAACACTAAAAGATCGCC
GCTGCCTTTTACAACACTGCACTTGCAAGCCGGGCTTTGTTATCGCACAA
ATTTTATGTAAACAAAAGAAAACTTCGATCTGCTCCATGATCAGCTTAGC
CCCCCTGATCATCCTAGTCCTCGCTTGCCTGGGAAACACGGCCAGCGAGA
AGTTGCCCAACATTCTGCTGATCCTGTCCGACGATCAGGATGTGGAGCTG
CGCGGTATGTTTCCCATGGAGCATACGATCGAAATGCTGGGTTTCGGTGG
CGCCCTGTTCCACAACGCCTACACGCCCTCGCCCATCTGCTGTCCGGCGA
GGACGAGTCTGCTGACGGGCATGTATGCGCACAATCACGGCACCCGGAAC
AATTCCGTAAGTGGTGGATGCTACGGACCACACTGGCGGCGAGCGCTGGA
GCCCCGGGCCTTGCCATACATCTTGCAGCAGCACGGATACAACACCTTCT
TTGGCGGGAAGTACTTGAATCAGTACTGGGGTGCTGGGGATGTGCCAAAG
GGTTGGAACCACTTCTATGGCCTTCACGGGAACTCTAGATACTATAACTA
CACACTGCGCGAAAATAGCGGCAACGTGCACTACGAGTCCACCTACCTAA
CCGATCTGCTAAGAGATCGCGCCGCTGACTTTCTAAGAAATGCTACACAA
TCCTCGGAACCGTTCTTCGCGATGGTCGCCCCACCGGCAGCCCATGAACC
CTTCACTCCGGCACCAAGACATGAGGGTGTGTTCTCCCATATCGAAGCCC
TGCGCACACCCAGCTTCAATCAAGTTAAGCAGGATAAGCACTGGTTGGTG
CGAGCAGCACGTCGTCTGCCCAACGAAACCATCAACACCATAGACACGTA
TTTCCAGAAACGCTGGGAAACGCTGCTGGCCGTGGACGAACTGGTCGTCA
CCTTGATGGGAGTGCTAAACGATACGCAATCGTTGGAGAACACCTACATT
ATCTACACCTCGGATAACGGCTACCATGTGGGGCAGTTTGCACAGCCCTT
CGATAAGAGACAGCCCTACGAAACGGATATTAACGTACCGCTGCTAATCC
GGGGACCTGGAATAGCACCTGAGAGCCACATTGACACTGCCGTCAGTCTA
GTGGACTTGGCACCGACTATATTGGCCTGGGCCGACATCGACACACCATC
CTACATGGATGGGCAATCATTTCACGAGCTTTTGCTCAACAAAAGGCGAA
GGGTTCCATTTTTCGAGCGTTCCCTGTTGATCGAGTACTGGGGCGAGGGA
ACTCTGGCCACCTTTAATCCTGAATGCCCTTGGCCAGAAAAGGATCGATT
GGCGCAGTGCACCCCCGCAGCGGATTGCCATTGCCAGGATGCATGGAACA
ACACCTACGCCTGCTTAAGAAATATTCGCCATCGCGAGGATCGCATTTAC
TGCGAATTTCGGGATAACGAGAACTTTTTGGAGGCATATGACCTGCAACT
GGATCCCTTTCAAATGACCAACATTGCCTACGATCTGCTGCCCATTGAAC
GAGCTTTGTATTCGTTGCGTCTCAAGAATCTCACACAGTGTTCGGGCCAC
TCGTGTTTTGTATAGATATATGCATATTACTCCTAGCCAAATAGTAATCC
AAAACCAAATTCAAGTCCGCTGGGCGCATATAGATTTCATATTCAGATAT
CATGTGATTTATGTTGCTATATACATAGTCTCATATTAATCGTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD21168.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-RA 1743 CG18278-RA 1..1743 1..1743 8715 100 Plus
CG30059-RA 1687 CG30059-RA 2..1687 58..1743 8220 99.1 Plus
CG33470-RA 910 CG33470-RA 848..910 1744..1682 315 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9296410..9297109 838..139 3485 99.9 Minus
chr2R 21145070 chr2R 9301137..9301836 838..139 3275 97.9 Minus
chr2R 21145070 chr2R 9295720..9296358 1471..833 3195 100 Minus
chr2R 21145070 chr2R 9300447..9301085 1471..833 3195 100 Minus
chr2R 21145070 chr2R 9295389..9295662 1743..1470 1370 100 Minus
chr2R 21145070 chr2R 9300116..9300389 1743..1470 1370 100 Minus
chr2R 21145070 chr2R 9297162..9297300 139..1 695 100 Minus
chr2R 21145070 chr2R 9301889..9302026 139..1 615 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13409063..13409762 838..139 3485 99.9 Minus
2R 25286936 2R 13413790..13414489 838..139 3275 97.9 Minus
2R 25286936 2R 13408373..13409011 1471..833 3195 100 Minus
2R 25286936 2R 13413100..13413738 1471..833 3195 100 Minus
2R 25286936 2R 13408041..13408315 1744..1470 1375 100 Minus
2R 25286936 2R 13412768..13413042 1744..1470 1375 100 Minus
2R 25286936 2R 13409815..13409953 139..1 695 100 Minus
2R 25286936 2R 13414542..13414679 139..1 615 97.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13410262..13410961 838..139 3485 99.8 Minus
2R 25260384 2R 13414989..13415688 838..139 3275 97.8 Minus
2R 25260384 2R 13414299..13414937 1471..833 3195 100 Minus
2R 25260384 2R 13409572..13410210 1471..833 3195 100 Minus
2R 25260384 2R 13413967..13414241 1744..1470 1375 100 Minus
2R 25260384 2R 13409240..13409514 1744..1470 1375 100 Minus
2R 25260384 2R 13411014..13411152 139..1 695 100 Minus
2R 25260384 2R 13415741..13415878 139..1 625 97.8 Minus
Blast to na_te.dros performed on 2019-03-16 10:02:36 has no hits.

SD21168.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:03:24 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9295389..9295660 1472..1743 100 <- Minus
chr2R 9295720..9296357 834..1471 100 <- Minus
chr2R 9296415..9297108 140..833 100 <- Minus
chr2R 9297162..9297300 1..139 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:48 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 137..1615 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:58 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 137..1615 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:50 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 137..1615 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:31 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 137..1615 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:53:01 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 137..1615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:08:32 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:58 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:50 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1677 67..1743 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:31 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:53:01 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1677 67..1743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:24 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13408042..13408313 1472..1743 100 <- Minus
2R 13408373..13409010 834..1471 100 <- Minus
2R 13409068..13409761 140..833 100 <- Minus
2R 13409815..13409953 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:24 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13408042..13408313 1472..1743 100 <- Minus
2R 13408373..13409010 834..1471 100 <- Minus
2R 13409068..13409761 140..833 100 <- Minus
2R 13409815..13409953 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:24 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13408042..13408313 1472..1743 100 <- Minus
2R 13408373..13409010 834..1471 100 <- Minus
2R 13409068..13409761 140..833 100 <- Minus
2R 13409815..13409953 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:50 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9295547..9295818 1472..1743 100 <- Minus
arm_2R 9295878..9296515 834..1471 100 <- Minus
arm_2R 9296573..9297266 140..833 100 <- Minus
arm_2R 9297320..9297458 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:54 Download gff for SD21168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13409241..13409512 1472..1743 100 <- Minus
2R 13409572..13410209 834..1471 100 <- Minus
2R 13410267..13410960 140..833 100 <- Minus
2R 13411014..13411152 1..139 100   Minus

SD21168.hyp Sequence

Translation from 0 to 1614

> SD21168.hyp
RVCPISVGHWLTLKDRRCLLQHCTCKPGFVIAQILCKQKKTSICSMISLA
PLIILVLACLGNTASEKLPNILLILSDDQDVELRGMFPMEHTIEMLGFGG
ALFHNAYTPSPICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHWRRALE
PRALPYILQQHGYNTFFGGKYLNQYWGAGDVPKGWNHFYGLHGNSRYYNY
TLRENSGNVHYESTYLTDLLRDRAADFLRNATQSSEPFFAMVAPPAAHEP
FTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARRLPNETINTIDTY
FQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQFAQPF
DKRQPYETDINVPLLIRGPGIAPESHIDTAVSLVDLAPTILAWADIDTPS
YMDGQSFHELLLNKRRRVPFFERSLLIEYWGEGTLATFNPECPWPEKDRL
AQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNENFLEAYDLQL
DPFQMTNIAYDLLPIERALYSLRLKNLTQCSGHSCFV*

SD21168.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-PA 492 CG18278-PA 1..492 46..537 2683 100 Plus
CG30059-PA 492 CG30059-PA 1..492 46..537 2665 99 Plus
Sulf1-PC 1114 CG6725-PC 47..407 62..418 689 40.9 Plus
Sulf1-PB 1114 CG6725-PB 47..407 62..418 689 40.9 Plus
Sulf1-PA 1114 CG6725-PA 47..407 62..418 689 40.9 Plus

SD21168.pep Sequence

Translation from 136 to 1614

> SD21168.pep
MISLAPLIILVLACLGNTASEKLPNILLILSDDQDVELRGMFPMEHTIEM
LGFGGALFHNAYTPSPICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHW
RRALEPRALPYILQQHGYNTFFGGKYLNQYWGAGDVPKGWNHFYGLHGNS
RYYNYTLRENSGNVHYESTYLTDLLRDRAADFLRNATQSSEPFFAMVAPP
AAHEPFTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARRLPNETIN
TIDTYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQ
FAQPFDKRQPYETDINVPLLIRGPGIAPESHIDTAVSLVDLAPTILAWAD
IDTPSYMDGQSFHELLLNKRRRVPFFERSLLIEYWGEGTLATFNPECPWP
EKDRLAQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNENFLEA
YDLQLDPFQMTNIAYDLLPIERALYSLRLKNLTQCSGHSCFV*

SD21168.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11188-PA 501 GF11188-PA 8..501 4..492 1824 67.6 Plus
Dana\GF16526-PA 1145 GF16526-PA 52..431 17..391 670 40.2 Plus
Dana\GF13402-PA 541 GF13402-PA 1..376 1..392 211 24.9 Plus
Dana\GF25237-PA 570 GF25237-PA 1..357 1..352 204 25.7 Plus
Dana\GF16526-PA 1145 GF16526-PA 965..1041 414..492 162 43 Plus
Dana\GF24576-PA 583 GF24576-PA 22..236 10..204 155 28.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22495-PA 492 GG22495-PA 1..492 1..492 2555 94.3 Plus
Dere\GG20070-PA 1115 GG20070-PA 47..427 16..391 677 40.1 Plus
Dere\GG20328-PA 478 GG20328-PA 6..375 7..392 202 23.9 Plus
Dere\GG15780-PA 565 GG15780-PA 21..363 18..359 192 25.6 Plus
Dere\GG19815-PA 565 GG19815-PA 21..363 18..359 190 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12546-PA 501 GH12546-PA 15..501 7..492 1608 60 Plus
Dgri\GH18078-PA 1191 GH18078-PA 74..453 17..391 671 40.5 Plus
Dgri\GH14468-PA 619 GH14468-PA 29..369 20..359 217 26.7 Plus
Dgri\GH22700-PA 542 GH22700-PA 19..360 6..367 208 25.1 Plus
Dgri\GH18737-PA 526 GH18737-PA 21..351 21..366 189 26.1 Plus
Dgri\GH18078-PA 1191 GH18078-PA 1013..1089 414..492 158 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-PA 492 CG18278-PA 1..492 1..492 2683 100 Plus
CG30059-PA 492 CG30059-PA 1..492 1..492 2665 99 Plus
Sulf1-PC 1114 CG6725-PC 47..407 17..373 689 40.9 Plus
Sulf1-PB 1114 CG6725-PB 47..407 17..373 689 40.9 Plus
Sulf1-PA 1114 CG6725-PA 47..407 17..373 689 40.9 Plus
CG8646-PB 562 CG8646-PB 6..394 7..391 216 24.3 Plus
CG32191-PC 564 CG32191-PC 8..357 10..355 206 25.7 Plus
CG32191-PB 564 CG32191-PB 8..357 10..355 206 25.7 Plus
CG7408-PD 585 CG7408-PD 15..297 4..295 173 23.8 Plus
CG7408-PC 585 CG7408-PC 15..297 4..295 173 23.8 Plus
CG7408-PB 585 CG7408-PB 15..297 4..295 173 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14019-PA 493 GI14019-PA 3..491 7..492 1652 61.7 Plus
Dmoj\GI24652-PA 1155 GI24652-PA 61..436 16..386 681 40.6 Plus
Dmoj\GI13615-PA 576 GI13615-PA 33..367 22..357 217 25.5 Plus
Dmoj\GI18487-PA 528 GI18487-PA 21..314 24..348 185 24.6 Plus
Dmoj\GI24623-PA 528 GI24623-PA 27..353 25..366 170 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10403-PA 499 GL10403-PA 5..499 1..492 1821 69.4 Plus
Dper\GL22250-PA 1173 GL22250-PA 61..440 17..391 674 40.5 Plus
Dper\GL22750-PA 575 GL22750-PA 37..370 24..358 201 26.6 Plus
Dper\GL11077-PA 545 GL11077-PA 26..356 24..368 197 24.9 Plus
Dper\GL22855-PA 559 GL22855-PA 15..335 11..355 162 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24970-PB 499 GA24970-PB 5..499 1..492 1829 69.6 Plus
Dpse\GA19814-PA 1160 GA19814-PA 60..439 17..391 674 40.5 Plus
Dpse\GA16747-PA 575 GA16747-PA 37..370 24..358 207 26.5 Plus
Dpse\GA21235-PA 545 GA21235-PA 26..356 24..368 197 24.9 Plus
Dpse\GA12883-PA 526 GA12883-PA 5..338 4..355 194 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20282-PA 492 GM20282-PA 1..492 1..492 2619 97.4 Plus
Dsec\GM15446-PA 1114 GM15446-PA 47..426 17..391 678 40.5 Plus
Dsec\GM18674-PA 524 GM18674-PA 7..335 8..355 160 27.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25763-PA 1772 GD25763-PA 1..405 41..445 2269 97.3 Plus
Dsim\GD20299-PA 1114 GD20299-PA 47..426 17..391 679 40.5 Plus
Dsim\GD10911-PA 633 GD10911-PA 6..375 7..392 210 23.6 Plus
Dsim\GD12374-PA 554 GD12374-PA 20..363 17..359 199 24.2 Plus
Dsim\GD20144-PA 439 GD20144-PA 7..335 8..355 169 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19791-PA 500 GJ19791-PA 1..498 1..490 1715 63.5 Plus
Dvir\GJ23505-PA 1135 GJ23505-PA 61..441 16..391 670 40.3 Plus
Dvir\GJ13952-PA 574 GJ13952-PA 33..367 22..357 214 25.2 Plus
Dvir\GJ21349-PA 531 GJ21349-PA 21..322 24..346 203 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10744-PA 505 GK10744-PA 33..503 23..490 1715 66.5 Plus
Dwil\GK13512-PA 1148 GK13512-PA 50..430 16..391 675 40.4 Plus
Dwil\GK13512-PA 1148 GK13512-PA 965..1041 414..492 154 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13365-PA 492 GE13365-PA 1..492 1..492 2553 94.7 Plus
Dyak\GE26324-PA 1108 GE26324-PA 46..426 16..391 680 40.4 Plus
Dyak\GE12487-PA 544 GE12487-PA 6..375 7..392 203 24.4 Plus
Dyak\GE22117-PA 565 GE22117-PA 21..363 18..359 195 25 Plus
Dyak\GE19935-PA 577 GE19935-PA 10..390 7..386 176 23.2 Plus