SD21513.complete Sequence
1963 bp (1963 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119249
> SD21513.complete
CAAACAAGTGTTAAAAACTATTTGTGCTGCAATATTTTCAGCAATTACCG
ACCGCCCTCGCCGCTGTTCACCACCCAACTTAACCAGCAACCCAGATTGG
AGCAACAAAATCCACAAAGGCATAAAGAATCGACTTACACAATAAAACCT
TAATCGGTTGGGTAAACAACTTGATTGCTGTGAGCAGCCAGTTGGGTTAA
TCTCTTCGATTTGTCAAGTCCAGCAACAATGAGCCAAACGGAGGCTAGCA
AGACACCCAAGATTCCGGACTCGGAGCCGGACGGATCGAAGGGCAAAGGG
AAGCAACAGCTGGAAACTTACCGGGTATATGTGGTCACCTGGAATGTGGG
CAGTCGATTTCCGGATAACATATCCCTCCGCCATCTGCTGGGACTGCAGG
ATGTGACGGTGGATAAGGACACGAAGGAGACTAATGCCCACTTGCCGGAC
ATCTATGCGTTGGGGCTCCAGGAGGTCAATGCCCAGCCGCAGCAACAGGT
GTTGGGACTGTTCAAGGAGGATCCGTGGACGCACAAGGCTAAGGAACTGC
TACGCAACTACGACTATGTGGCCGTAAAGACCGAGCAGATGCAGGGGCTG
CTGCTCAGCATGTTCGTGAGGCGGCAGCACGTTGAGCACTTGCAGGACAT
CGAGGCGGAGTTCACGAGGACCGGTTTCGGTGGCATTTGGGGCAACAAGG
GCGCCGTCAGTGTCAGGTTCACCCTTTACGGCTGCGGACTGGCCTTTGTG
GTGGCCCATCTGACTGCCCATGACCATATGATGGACGAGCGCATCGAGGA
CTACAAGCAGATACTGGAGAACCATCACTACCACGTCAAGCGGTATAGGG
AGATCTACGATCACGACTATGTCTTCTGGTTTGGCGATCTGAACTTCCGA
CTGCAGGGCAGCGATTCCTCGACGGAAGTGCGCGAGTTGGTACGCGATGA
GTCCCAGCACGAGGCCCTTATCCAGCGGGATCAATTGTATCAAGTTCGCG
AGAAGTCGCAGCTGGCCTTTCAGGTTCTGCAGGAGCGACTGCCCGCCTTT
CCGCCCACCTTCAAGTTCCGCGAGGGCACCTCCGAGTACGACCTGAAGCG
GCGGCCAGCCTGGACGGATCGGATAATGTACGCCGTGCAGCCACTGAACC
GGCAGCCCGGCATGCAGCTATCCATTGAGCAATGCTCGTATAAGTCCCAT
CCCCTGTACACCATCAGTGATCACAAGCCGGTGACCAGTGACTTTACCAT
CAAGCTCTACCCGAATGTACGGGCGCCCGGCGTGGTGTTCTCGCCTCTGT
CGCTCTGGAAGATTGGGGACGAGAACACGGTGGAGTATCACAAGCAGGCA
GAGTTCGACGAGGGGTCCAACGACTGGATTGGCATCTTTCCGTCGGAGTA
CGCCAGTTTGGCGGATTACGTAGCCTACGAGTATGTCAATCAGGCTGAGT
CGCCCTCATCCTCGGACTCCAATCACCAACCGGATCCGTTTGAGACGCCC
TCGCATCATCGAAGGGGTCGGCATCATCACAGGAATCGCCAGCGACAGCG
TCGCCATCAGGAGGCTAATGCCCAAGAGTTGGTGCGGCTAGATTTCGCCG
ACGATGTGGAACTGCGTCACGGCGAGCAATACCTGTTGATATATTTCCGC
AGCACCGGAGTCCGGGGCGTGACCAGTTTGGCCGGCGTCAGTGGTGTCTT
TGTGGCGGAGAAGCGGCACGGCTCGCCCCATCGGACGGAGTACCATGTTG
ACTAGCTAGCCGAGGCTCTGGATATCTTTATTCTTTAGTCTCTGTTTCCA
TAACCGCCGTGTTGATCTAATTTTATTGACCTCATGTGACCGTGTTAAGT
TTGCTTGTTAGCTGTTGACTCAGCGCCTCCTCTCCTCTCCCCCCCTCCAA
AATACGTTAATACATACATATGTAATTATACATAATTATCGAACCAAAAA
AAAAAAAAAAAAA
SD21513.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9784-RA | 1949 | CG9784-RA | 1..1947 | 1..1947 | 9735 | 100 | Plus |
CG9784.a | 1977 | CG9784.a | 70..1975 | 42..1947 | 9530 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 16486194..16488138 | 1945..1 | 9725 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16596524..16598470 | 1947..1 | 9735 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 16604622..16606568 | 1947..1 | 9735 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 23:09:15 has no hits.
SD21513.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:10:04 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 16486194..16488138 | 1..1945 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:52 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1527 | 229..1755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:14 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1527 | 229..1755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:40 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RC | 1..1560 | 229..1788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:32:00 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1527 | 229..1755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:15 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RC | 1..1560 | 229..1788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:13:39 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1945 | 1..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:14 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1945 | 1..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:40 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 27..1971 | 1..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:00 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 1..1945 | 1..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:15 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9784-RA | 27..1971 | 1..1945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16596526..16598470 | 1..1945 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16596526..16598470 | 1..1945 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16596526..16598470 | 1..1945 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:40 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16490559..16492503 | 1..1945 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:34 Download gff for
SD21513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16604624..16606568 | 1..1945 | 100 | | Minus |
SD21513.pep Sequence
Translation from 228 to 1754
> SD21513.pep
MSQTEASKTPKIPDSEPDGSKGKGKQQLETYRVYVVTWNVGSRFPDNISL
RHLLGLQDVTVDKDTKETNAHLPDIYALGLQEVNAQPQQQVLGLFKEDPW
THKAKELLRNYDYVAVKTEQMQGLLLSMFVRRQHVEHLQDIEAEFTRTGF
GGIWGNKGAVSVRFTLYGCGLAFVVAHLTAHDHMMDERIEDYKQILENHH
YHVKRYREIYDHDYVFWFGDLNFRLQGSDSSTEVRELVRDESQHEALIQR
DQLYQVREKSQLAFQVLQERLPAFPPTFKFREGTSEYDLKRRPAWTDRIM
YAVQPLNRQPGMQLSIEQCSYKSHPLYTISDHKPVTSDFTIKLYPNVRAP
GVVFSPLSLWKIGDENTVEYHKQAEFDEGSNDWIGIFPSEYASLADYVAY
EYVNQAESPSSSDSNHQPDPFETPSHHRRGRHHHRNRQRQRRHQEANAQE
LVRLDFADDVELRHGEQYLLIYFRSTGVRGVTSLAGVSGVFVAEKRHGSP
HRTEYHVD*
SD21513.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9784-PB | 508 | CG9784-PB | 1..508 | 1..508 | 2712 | 100 | Plus |
CG9784-PC | 519 | CG9784-PC | 1..508 | 1..508 | 2712 | 100 | Plus |
CG9784-PA | 508 | CG9784-PA | 1..508 | 1..508 | 2712 | 100 | Plus |
CG6805-PB | 348 | CG6805-PB | 12..312 | 33..343 | 828 | 51.1 | Plus |
CG6805-PA | 357 | CG6805-PA | 12..312 | 33..343 | 828 | 51.1 | Plus |
Synj-PC | 1218 | CG6562-PC | 570..820 | 52..301 | 343 | 31.1 | Plus |
Synj-PA | 1218 | CG6562-PA | 570..820 | 52..301 | 343 | 31.1 | Plus |
Synj-PB | 1218 | CG6562-PB | 570..820 | 52..301 | 343 | 31.1 | Plus |
Ocrl-PB | 850 | CG3573-PB | 187..480 | 33..343 | 327 | 30.5 | Plus |
Ocrl-PA | 850 | CG3573-PA | 187..480 | 33..343 | 327 | 30.5 | Plus |
INPP5E-PB | 747 | CG10426-PB | 393..702 | 33..339 | 269 | 29.3 | Plus |
INPP5E-PA | 747 | CG10426-PA | 393..702 | 33..339 | 269 | 29.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA22035-PA | 507 | GA22035-PA | 9..507 | 2..508 | 2079 | 79.3 | Plus |
Dpse\GA19874-PA | 354 | GA19874-PA | 12..311 | 33..343 | 829 | 49.8 | Plus |
Dpse\GA19686-PA | 1239 | GA19686-PA | 594..824 | 71..301 | 347 | 31.6 | Plus |
Dpse\GA17531-PA | 844 | GA17531-PA | 185..478 | 33..343 | 332 | 31 | Plus |
Dpse\GA10312-PA | 765 | GA10312-PA | 411..720 | 33..339 | 285 | 30.8 | Plus |
SD21513.hyp Sequence
Translation from 228 to 1754
> SD21513.hyp
MSQTEASKTPKIPDSEPDGSKGKGKQQLETYRVYVVTWNVGSRFPDNISL
RHLLGLQDVTVDKDTKETNAHLPDIYALGLQEVNAQPQQQVLGLFKEDPW
THKAKELLRNYDYVAVKTEQMQGLLLSMFVRRQHVEHLQDIEAEFTRTGF
GGIWGNKGAVSVRFTLYGCGLAFVVAHLTAHDHMMDERIEDYKQILENHH
YHVKRYREIYDHDYVFWFGDLNFRLQGSDSSTEVRELVRDESQHEALIQR
DQLYQVREKSQLAFQVLQERLPAFPPTFKFREGTSEYDLKRRPAWTDRIM
YAVQPLNRQPGMQLSIEQCSYKSHPLYTISDHKPVTSDFTIKLYPNVRAP
GVVFSPLSLWKIGDENTVEYHKQAEFDEGSNDWIGIFPSEYASLADYVAY
EYVNQAESPSSSDSNHQPDPFETPSHHRRGRHHHRNRQRQRRHQEANAQE
LVRLDFADDVELRHGEQYLLIYFRSTGVRGVTSLAGVSGVFVAEKRHGSP
HRTEYHVD*
SD21513.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9784-PB | 508 | CG9784-PB | 1..508 | 1..508 | 2712 | 100 | Plus |
CG9784-PC | 519 | CG9784-PC | 1..508 | 1..508 | 2712 | 100 | Plus |
CG9784-PA | 508 | CG9784-PA | 1..508 | 1..508 | 2712 | 100 | Plus |
CG6805-PB | 348 | CG6805-PB | 12..312 | 33..343 | 828 | 51.1 | Plus |
CG6805-PA | 357 | CG6805-PA | 12..312 | 33..343 | 828 | 51.1 | Plus |