Clone SD21513 Report

Search the DGRC for SD21513

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:215
Well:13
Vector:pOT2
Associated Gene/TranscriptCG9784-RA
Protein status:SD21513.pep: gold
Preliminary Size:1765
Sequenced Size:1963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9784 2002-01-01 Sim4 clustering to Release 2
CG9784 2002-05-18 Blastp of sequenced clone
CG9784 2003-01-01 Sim4 clustering to Release 3
CG9784 2008-04-29 Release 5.5 accounting
CG9784 2008-08-15 Release 5.9 accounting
CG9784 2008-12-18 5.12 accounting

Clone Sequence Records

SD21513.complete Sequence

1963 bp (1963 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119249

> SD21513.complete
CAAACAAGTGTTAAAAACTATTTGTGCTGCAATATTTTCAGCAATTACCG
ACCGCCCTCGCCGCTGTTCACCACCCAACTTAACCAGCAACCCAGATTGG
AGCAACAAAATCCACAAAGGCATAAAGAATCGACTTACACAATAAAACCT
TAATCGGTTGGGTAAACAACTTGATTGCTGTGAGCAGCCAGTTGGGTTAA
TCTCTTCGATTTGTCAAGTCCAGCAACAATGAGCCAAACGGAGGCTAGCA
AGACACCCAAGATTCCGGACTCGGAGCCGGACGGATCGAAGGGCAAAGGG
AAGCAACAGCTGGAAACTTACCGGGTATATGTGGTCACCTGGAATGTGGG
CAGTCGATTTCCGGATAACATATCCCTCCGCCATCTGCTGGGACTGCAGG
ATGTGACGGTGGATAAGGACACGAAGGAGACTAATGCCCACTTGCCGGAC
ATCTATGCGTTGGGGCTCCAGGAGGTCAATGCCCAGCCGCAGCAACAGGT
GTTGGGACTGTTCAAGGAGGATCCGTGGACGCACAAGGCTAAGGAACTGC
TACGCAACTACGACTATGTGGCCGTAAAGACCGAGCAGATGCAGGGGCTG
CTGCTCAGCATGTTCGTGAGGCGGCAGCACGTTGAGCACTTGCAGGACAT
CGAGGCGGAGTTCACGAGGACCGGTTTCGGTGGCATTTGGGGCAACAAGG
GCGCCGTCAGTGTCAGGTTCACCCTTTACGGCTGCGGACTGGCCTTTGTG
GTGGCCCATCTGACTGCCCATGACCATATGATGGACGAGCGCATCGAGGA
CTACAAGCAGATACTGGAGAACCATCACTACCACGTCAAGCGGTATAGGG
AGATCTACGATCACGACTATGTCTTCTGGTTTGGCGATCTGAACTTCCGA
CTGCAGGGCAGCGATTCCTCGACGGAAGTGCGCGAGTTGGTACGCGATGA
GTCCCAGCACGAGGCCCTTATCCAGCGGGATCAATTGTATCAAGTTCGCG
AGAAGTCGCAGCTGGCCTTTCAGGTTCTGCAGGAGCGACTGCCCGCCTTT
CCGCCCACCTTCAAGTTCCGCGAGGGCACCTCCGAGTACGACCTGAAGCG
GCGGCCAGCCTGGACGGATCGGATAATGTACGCCGTGCAGCCACTGAACC
GGCAGCCCGGCATGCAGCTATCCATTGAGCAATGCTCGTATAAGTCCCAT
CCCCTGTACACCATCAGTGATCACAAGCCGGTGACCAGTGACTTTACCAT
CAAGCTCTACCCGAATGTACGGGCGCCCGGCGTGGTGTTCTCGCCTCTGT
CGCTCTGGAAGATTGGGGACGAGAACACGGTGGAGTATCACAAGCAGGCA
GAGTTCGACGAGGGGTCCAACGACTGGATTGGCATCTTTCCGTCGGAGTA
CGCCAGTTTGGCGGATTACGTAGCCTACGAGTATGTCAATCAGGCTGAGT
CGCCCTCATCCTCGGACTCCAATCACCAACCGGATCCGTTTGAGACGCCC
TCGCATCATCGAAGGGGTCGGCATCATCACAGGAATCGCCAGCGACAGCG
TCGCCATCAGGAGGCTAATGCCCAAGAGTTGGTGCGGCTAGATTTCGCCG
ACGATGTGGAACTGCGTCACGGCGAGCAATACCTGTTGATATATTTCCGC
AGCACCGGAGTCCGGGGCGTGACCAGTTTGGCCGGCGTCAGTGGTGTCTT
TGTGGCGGAGAAGCGGCACGGCTCGCCCCATCGGACGGAGTACCATGTTG
ACTAGCTAGCCGAGGCTCTGGATATCTTTATTCTTTAGTCTCTGTTTCCA
TAACCGCCGTGTTGATCTAATTTTATTGACCTCATGTGACCGTGTTAAGT
TTGCTTGTTAGCTGTTGACTCAGCGCCTCCTCTCCTCTCCCCCCCTCCAA
AATACGTTAATACATACATATGTAATTATACATAATTATCGAACCAAAAA
AAAAAAAAAAAAA

SD21513.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9784-RA 1949 CG9784-RA 1..1947 1..1947 9735 100 Plus
CG9784.a 1977 CG9784.a 70..1975 42..1947 9530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16486194..16488138 1945..1 9725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16596524..16598470 1947..1 9735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16604622..16606568 1947..1 9735 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:09:15 has no hits.

SD21513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:10:04 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16486194..16488138 1..1945 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:52 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1527 229..1755 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:14 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1527 229..1755 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:40 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RC 1..1560 229..1788 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:32:00 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1527 229..1755 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:15 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RC 1..1560 229..1788 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:13:39 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:14 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:40 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 27..1971 1..1945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:00 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:15 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9784-RA 27..1971 1..1945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
X 16596526..16598470 1..1945 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
X 16596526..16598470 1..1945 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:04 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
X 16596526..16598470 1..1945 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:40 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16490559..16492503 1..1945 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:34 Download gff for SD21513.complete
Subject Subject Range Query Range Percent Splice Strand
X 16604624..16606568 1..1945 100   Minus

SD21513.pep Sequence

Translation from 228 to 1754

> SD21513.pep
MSQTEASKTPKIPDSEPDGSKGKGKQQLETYRVYVVTWNVGSRFPDNISL
RHLLGLQDVTVDKDTKETNAHLPDIYALGLQEVNAQPQQQVLGLFKEDPW
THKAKELLRNYDYVAVKTEQMQGLLLSMFVRRQHVEHLQDIEAEFTRTGF
GGIWGNKGAVSVRFTLYGCGLAFVVAHLTAHDHMMDERIEDYKQILENHH
YHVKRYREIYDHDYVFWFGDLNFRLQGSDSSTEVRELVRDESQHEALIQR
DQLYQVREKSQLAFQVLQERLPAFPPTFKFREGTSEYDLKRRPAWTDRIM
YAVQPLNRQPGMQLSIEQCSYKSHPLYTISDHKPVTSDFTIKLYPNVRAP
GVVFSPLSLWKIGDENTVEYHKQAEFDEGSNDWIGIFPSEYASLADYVAY
EYVNQAESPSSSDSNHQPDPFETPSHHRRGRHHHRNRQRQRRHQEANAQE
LVRLDFADDVELRHGEQYLLIYFRSTGVRGVTSLAGVSGVFVAEKRHGSP
HRTEYHVD*

SD21513.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9784-PB 508 CG9784-PB 1..508 1..508 2712 100 Plus
CG9784-PC 519 CG9784-PC 1..508 1..508 2712 100 Plus
CG9784-PA 508 CG9784-PA 1..508 1..508 2712 100 Plus
CG6805-PB 348 CG6805-PB 12..312 33..343 828 51.1 Plus
CG6805-PA 357 CG6805-PA 12..312 33..343 828 51.1 Plus
Synj-PC 1218 CG6562-PC 570..820 52..301 343 31.1 Plus
Synj-PA 1218 CG6562-PA 570..820 52..301 343 31.1 Plus
Synj-PB 1218 CG6562-PB 570..820 52..301 343 31.1 Plus
Ocrl-PB 850 CG3573-PB 187..480 33..343 327 30.5 Plus
Ocrl-PA 850 CG3573-PA 187..480 33..343 327 30.5 Plus
INPP5E-PB 747 CG10426-PB 393..702 33..339 269 29.3 Plus
INPP5E-PA 747 CG10426-PA 393..702 33..339 269 29.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22035-PA 507 GA22035-PA 9..507 2..508 2079 79.3 Plus
Dpse\GA19874-PA 354 GA19874-PA 12..311 33..343 829 49.8 Plus
Dpse\GA19686-PA 1239 GA19686-PA 594..824 71..301 347 31.6 Plus
Dpse\GA17531-PA 844 GA17531-PA 185..478 33..343 332 31 Plus
Dpse\GA10312-PA 765 GA10312-PA 411..720 33..339 285 30.8 Plus

SD21513.hyp Sequence

Translation from 228 to 1754

> SD21513.hyp
MSQTEASKTPKIPDSEPDGSKGKGKQQLETYRVYVVTWNVGSRFPDNISL
RHLLGLQDVTVDKDTKETNAHLPDIYALGLQEVNAQPQQQVLGLFKEDPW
THKAKELLRNYDYVAVKTEQMQGLLLSMFVRRQHVEHLQDIEAEFTRTGF
GGIWGNKGAVSVRFTLYGCGLAFVVAHLTAHDHMMDERIEDYKQILENHH
YHVKRYREIYDHDYVFWFGDLNFRLQGSDSSTEVRELVRDESQHEALIQR
DQLYQVREKSQLAFQVLQERLPAFPPTFKFREGTSEYDLKRRPAWTDRIM
YAVQPLNRQPGMQLSIEQCSYKSHPLYTISDHKPVTSDFTIKLYPNVRAP
GVVFSPLSLWKIGDENTVEYHKQAEFDEGSNDWIGIFPSEYASLADYVAY
EYVNQAESPSSSDSNHQPDPFETPSHHRRGRHHHRNRQRQRRHQEANAQE
LVRLDFADDVELRHGEQYLLIYFRSTGVRGVTSLAGVSGVFVAEKRHGSP
HRTEYHVD*

SD21513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9784-PB 508 CG9784-PB 1..508 1..508 2712 100 Plus
CG9784-PC 519 CG9784-PC 1..508 1..508 2712 100 Plus
CG9784-PA 508 CG9784-PA 1..508 1..508 2712 100 Plus
CG6805-PB 348 CG6805-PB 12..312 33..343 828 51.1 Plus
CG6805-PA 357 CG6805-PA 12..312 33..343 828 51.1 Plus