Clone SD21550 Report

Search the DGRC for SD21550

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:215
Well:50
Vector:pOT2
Associated Gene/TranscriptCG13204-RB
Protein status:SD21550.pep: gold
Preliminary Size:2070
Sequenced Size:1815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13204 2004-01-13 Blastp of sequenced clone
CG13204 2008-04-29 Release 5.5 accounting
CG13204 2008-08-15 Release 5.9 accounting
CG13204 2008-12-18 5.12 accounting

Clone Sequence Records

SD21550.complete Sequence

1815 bp (1815 high quality bases) assembled on 2004-01-13

GenBank Submission: BT011330

> SD21550.complete
AAAAAATTAAAAGAATATTTAAATCTGTGTTGAAATATGCTTTTGGTAGC
TGACAACGTATTGAGCCGCATCCTTAAAAATTAGCAGTCCTGATAATAGA
ATCAGCGATAAGTTTAGGCCTCGAAACGGAAATGGAAAAATCTAAGGGAC
AGTTATACAAAGTATCTTCGCTCGTTTCGCGTAGGCACAAAGACATCCAA
GAAGTACCAGTACTGGGCCCATGCAGATCACATGGATTTCCTAAAGCCCT
TCCAGGGACCGGGCAGGAACTCCGCGAATGGCAATGGAAAATCCAACGAC
GAGGACGACACAGAGTGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGC
CAGCAATGGAGGCGAGGATGAGCTGAAGATAACCATTGCCACTGCATCGG
CTGGTTGCTCATCCATGGGGACGCACACGGTTAATACCTATACTACCGCT
TTAAGCAGTACTTCGGCGTCCGGCATAACATCAAGTTTGGGCGCGACCAC
GCCCCCGAATATGATCTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAG
GTTCTGGGTCCGTGGGACCGCAAATCCACAACAGCAATAGCAACGGCAGT
GCAACCGGAAGTCTAAACTGTGCTGCAGTGGCACCGCTCAGTTCGATGAC
TCCACCTGCCACCAGTGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCA
TCTCACCCGCATCCTCAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCC
AATGCAAATGCCCTGGCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGG
CGTGAGCGGACTGGCCCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGG
CGGCAGTGGCTGCTGGTCTTCCCCTGCCACCTACGATCACGCCGCCTGGT
TGCAGCACCGGCAGCGCAACCAACAGCAATGTCGGTTGTCTGATCATCGA
GCCGCATCTCTTTGCGGCGGCGGACAACTTCAAGAAGGAACTGACAGCGG
CTGCGGCAGCTGGAGCACCTTTGGGATTGTTCCAGAACCTGGCCAACCAA
GTGCAGAACGCCAATCGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGG
TAATCCCACTCCTCCGCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGC
GAAGGGTACAACCTTCGCCGCAAACCACGGCCATCAACCTAAGTTGCTCC
GGAGGGAATTCCGTACAAACGCAGCAGCAGCAGTCAATGCAAATGCCACA
AATTCAACAGCAACAACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCG
ATCCGCGTTTTCCGAGCGATTGGGACGTCTCTGCCGTGCTACAGGCCAAC
AGAGAACTTGACGCAAACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGT
GCGAGCTATGCCCATGAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGC
GAATCGTCAGTGATTTGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGT
GGAGCGCCACCGCCGGATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAA
GTACTGCAGCATAGATACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGG
TCATACCCCCGCCGCCAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTG
TATGTGATGTCGCCGTCGCGTGTGGAGAGCATGATAGACATCTCCTCCGA
CGAGGAGGCGACCATGAACGGAGCGCCCTCCACGGGCCAGGTTTAAGCGT
ATTCGTACAAGTTATCTCTAAATTAAAATTAAATTAATCTCAACTAGAAA
AAAAAAAAAAAAAAA

SD21550.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1804 CG13204-RB 8..1804 1..1797 8970 99.9 Plus
CG13204.a 1749 CG13204.a 69..1749 117..1797 8390 99.9 Plus
CG13204-RA 2132 CG13204-RA 454..2132 116..1794 8380 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7256205..7257737 265..1797 7635 99.9 Plus
chr2R 21145070 chr2R 7255998..7256149 116..267 760 100 Plus
chr2R 21145070 chr2R 7255736..7255850 1..115 575 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11368755..11370287 265..1797 7650 99.9 Plus
2R 25286936 2R 11368548..11368699 116..267 760 100 Plus
2R 25286936 2R 11368286..11368400 1..115 575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11369954..11371486 265..1797 7650 99.9 Plus
2R 25260384 2R 11369747..11369898 116..267 760 100 Plus
2R 25260384 2R 11369485..11369599 1..115 575 100 Plus
Blast to na_te.dros performed 2019-03-16 00:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6854 1215..1276 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2418 1222..1276 133 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2402 1215..1272 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 1222..1286 123 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6806 1222..1276 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2394 1215..1270 119 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6899 1215..1270 116 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2427 1221..1270 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6863..6923 1211..1270 114 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1132 1216..1272 114 66.7 Plus

SD21550.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:37:04 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7255736..7255850 1..115 100 -> Plus
chr2R 7255998..7256148 116..266 100 -> Plus
chr2R 7256207..7257737 267..1797 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:54 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 183..1818 111..1746 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:35 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 183..1818 111..1746 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:45 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 183..1818 111..1746 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:23 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 183..1818 111..1746 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:06:50 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 183..1818 111..1746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:52:20 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 8..1801 1..1794 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:34 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 8..1801 1..1794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:45 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 1..1797 1..1797 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:23 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 8..1801 1..1794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:06:50 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 1..1797 1..1797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:04 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11368548..11368698 116..266 100 -> Plus
2R 11368757..11370287 267..1797 99   Plus
2R 11368286..11368400 1..115 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:04 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11368548..11368698 116..266 100 -> Plus
2R 11368757..11370287 267..1797 99   Plus
2R 11368286..11368400 1..115 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:04 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11368548..11368698 116..266 100 -> Plus
2R 11368757..11370287 267..1797 99   Plus
2R 11368286..11368400 1..115 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:45 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256053..7256203 116..266 100 -> Plus
arm_2R 7255791..7255905 1..115 100 -> Plus
arm_2R 7256262..7257792 267..1797 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:58 Download gff for SD21550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11369956..11371486 267..1797 99   Plus
2R 11369485..11369599 1..115 100 -> Plus
2R 11369747..11369897 116..266 100 -> Plus

SD21550.pep Sequence

Translation from 231 to 1745

> SD21550.pep
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQV*

SD21550.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12551-PA 793 GF12551-PA 286..788 1..504 1868 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20199-PA 605 GG20199-PA 102..605 1..504 2557 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21384-PA 582 GH21384-PA 102..568 1..497 1158 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PB 504 CG13204-PB 1..504 1..504 2615 100 Plus
CG13204-PA 605 CG13204-PA 102..605 1..504 2615 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18561-PA 581 GI18561-PA 102..560 1..497 1284 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11688-PA 572 GL11688-PA 102..567 1..500 1647 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24236-PA 578 GA24236-PA 102..564 1..497 1639 72.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21286-PA 605 GM21286-PA 102..605 1..504 2584 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10794-PA 605 GD10794-PA 102..605 1..504 2589 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20354-PA 586 GJ20354-PA 102..561 1..497 1311 65.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23098-PA 624 GK23098-PA 102..573 1..502 1279 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12359-PA 603 GE12359-PA 102..603 1..504 2531 97.4 Plus

SD21550.hyp Sequence

Translation from 231 to 1745

> SD21550.hyp
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQV*

SD21550.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PB 504 CG13204-PB 1..504 1..504 2615 100 Plus
CG13204-PA 605 CG13204-PA 102..605 1..504 2615 100 Plus