Clone SD21818 Report

Search the DGRC for SD21818

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:218
Well:18
Vector:pOT2
Associated Gene/TranscriptAats-ser-RA
Protein status:SD21818.pep: gold
Preliminary Size:1405
Sequenced Size:1482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4938 2002-01-01 Sim4 clustering to Release 2
CG4938 2002-05-18 Blastp of sequenced clone
CG4938 2003-01-01 Sim4 clustering to Release 3
Aats-ser 2008-04-29 Release 5.5 accounting
Aats-ser 2008-08-15 Release 5.9 accounting
Aats-ser 2008-12-18 5.12 accounting

Clone Sequence Records

SD21818.complete Sequence

1482 bp (1482 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119252

> SD21818.complete
CTCGTGCCTTTACAATTTGTTATGTGCGTTTTTGCTGAATATAATTATCA
AATTGTGCTCAAAAACATTTAATGTTTTCGCTTAAAAGTGAATGAAATTG
CTCCCCAACCCGCGACCGCTGGCGTGCAACAAAGAAGTTTGTTAATTAAA
ATGAAATTGCCGACGAATTCTCAACTTTGGCGGCCTCTGCTGCTGCTGCG
CCGCCAAAGGTCGCATGACGCAAAGGCGGTGGAGGCCCCAATACACAGAC
CGGTTCCAACCAGTGCCCAGCTGGACGAACTGGAGCGGAATGTGGTTGTG
CGCCACCACAAGAACAACGTGCCACTGATACGCTCTCTCATCCAGGAGTT
GGATGCGGGAGACCAGCACAAGTTGAGGCAGCTGCAGGCGGAACTGGAAC
AGCTGCCCAATGCCACGCATCCGCGCCTGCGAGACTACGGAGAGGAGCCG
CGGGAACTGGCGCAGTATGTCCACCGGCAGTTGACGCCACAGTCCAGGCT
CAAGGAGTTCTCTGAATTAGCCCGTGCTCTTAACCTCTACCGCATGGATC
ACTTGGGTAACTACACTGGCCACAAAAGCTACTACCTTACTGGCCAGCTG
GCAACTTTGGAGCAGGCCATCATACAATATGCACTTCAGGCAGTCACCGA
ACACGGTTTTAAGCTGATCTCCGTGCCGGACATACTGCCTAAGGAGGTGA
TCGAATCTTGTGGCATGCGCACCGAGGGTGAACGCACACAGGTCTACAAA
CTGGACACCGGCGAGTGCCTATCGGGCACTTCGGAAATGGCCCTGGCTGG
ATTCTTTGCGAATAAACTACTGTCGGAGGACCAACTGCCACTGAAAGTGA
CCGCCGTGAGTCGATGCTATAGGGCTGAAACATCGGGACTGCAGGAGGAG
AAAGGCATTTATCGTGTACACCAGTTCAACAAGGTGGAAATGTTTGCCAT
CTGCACCGAGGAGCAGTCGGAGGCCGAGCTGGAGGAGTTTAAGAACATTG
AGGTAGATCTTTTCCGTCGACTGGGCCTCAACTTTCGGCTGCTGGACATG
CCACCTTGCGAGCTGGGCGCTCCGGCGTACCAGAAGTACGACATAGAAGC
CTGGATGCCAGGCCGTCAGATGTGGGGCGAGATCTCAAGTTGCAGCAATT
GCACGGATTATCAGGCAAGGCGGCTGGGCATCAGATACCGGCGCTCCGCT
GACGGACAGATCCTCCATGCCCACACCATCAACGGAACTGCGACGGCTAT
TCCGCGTCTGCTGATTGCCTTGCTGGAATCTTATCAGAAGGAAGATGGCA
TCGAGATACCTGCCGTTCTGCGACCATTCATGGACAACCAGGAGCTGATC
ACGCGAAACAAACGGATACCGGAGACGAAGCTGGTCAAATTCATCAAGGC
CTAGGCTTAACACATTCTGTACCTTTGACTGTTATCATTAAATCGTTGGG
CTTATCAACGAAAAAAAAAAAAAAAAAAAAAA

SD21818.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-ser-RA 1533 Aats-ser-RA 10..1464 9..1463 7260 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11165320..11166771 9..1460 7170 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15340694..15342148 9..1463 7260 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15081525..15082979 9..1463 7260 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 15:16:45 has no hits.

SD21818.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:17:46 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11165313..11166771 1..1460 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:58 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 1..1254 151..1404 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:01 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 1..1254 151..1404 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:07:28 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 1..1254 151..1404 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:31:45 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 1..1254 151..1404 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:01 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 1..1254 151..1404 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:13:23 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 3..1461 1..1460 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:01 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 3..1461 1..1460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:28 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 21..1479 1..1460 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:31:47 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 3..1461 1..1460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:01 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-ser-RA 21..1479 1..1460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:46 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15340687..15342145 1..1460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:46 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15340687..15342145 1..1460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:46 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15340687..15342145 1..1460 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:28 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11166409..11167867 1..1460 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:21 Download gff for SD21818.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15081518..15082976 1..1460 99   Plus

SD21818.pep Sequence

Translation from 150 to 1403

> SD21818.pep
MKLPTNSQLWRPLLLLRRQRSHDAKAVEAPIHRPVPTSAQLDELERNVVV
RHHKNNVPLIRSLIQELDAGDQHKLRQLQAELEQLPNATHPRLRDYGEEP
RELAQYVHRQLTPQSRLKEFSELARALNLYRMDHLGNYTGHKSYYLTGQL
ATLEQAIIQYALQAVTEHGFKLISVPDILPKEVIESCGMRTEGERTQVYK
LDTGECLSGTSEMALAGFFANKLLSEDQLPLKVTAVSRCYRAETSGLQEE
KGIYRVHQFNKVEMFAICTEEQSEAELEEFKNIEVDLFRRLGLNFRLLDM
PPCELGAPAYQKYDIEAWMPGRQMWGEISSCSNCTDYQARRLGIRYRRSA
DGQILHAHTINGTATAIPRLLIALLESYQKEDGIEIPAVLRPFMDNQELI
TRNKRIPETKLVKFIKA*

SD21818.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22996-PA 419 GF22996-PA 1..419 1..417 1855 85.4 Plus
Dana\GF15510-PA 501 GF15510-PA 190..461 139..394 388 33 Plus
Dana\GF18895-PA 461 GF18895-PA 143..429 84..376 155 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16916-PA 416 GG16916-PA 1..416 1..417 1968 94.7 Plus
Dere\GG24463-PA 501 GG24463-PA 190..461 139..394 378 32.2 Plus
Dere\GG12371-PA 464 GG12371-PA 146..432 84..376 161 24.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19144-PA 436 GH19144-PA 40..435 34..417 1564 73.5 Plus
Dgri\GH10337-PA 504 GH10337-PA 190..461 139..394 385 32.2 Plus
Dgri\GH24998-PA 160 GH24998-PA 10..117 289..394 217 38 Plus
Dgri\GH19093-PA 465 GH19093-PA 180..433 135..387 178 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
SerRS-m-PB 417 CG4938-PB 1..417 1..417 2159 100 Plus
SerRS-m-PA 417 CG4938-PA 1..417 1..417 2159 100 Plus
SerRS-PB 501 CG17259-PB 53..461 16..394 372 26.8 Plus
SerRS-PA 501 CG17259-PA 53..461 16..394 372 26.8 Plus
Slimp-PA 464 CG31133-PA 147..432 85..376 180 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10857-PA 407 GI10857-PA 12..402 28..416 1539 72.5 Plus
Dmoj\GI17096-PA 501 GI17096-PA 190..461 139..394 391 32.6 Plus
Dmoj\GI23429-PA 466 GI23429-PA 173..442 126..390 184 25.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23244-PA 418 GL23244-PA 26..417 20..417 1733 80.9 Plus
Dper\GL19573-PA 501 GL19573-PA 190..461 139..394 378 32.2 Plus
Dper\GL24144-PA 466 GL24144-PA 256..432 200..376 156 26.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18540-PA 418 GA18540-PA 1..417 1..417 1771 81 Plus
Dpse\GA14420-PA 501 GA14420-PA 190..461 139..394 378 32.2 Plus
Dpse\GA16033-PA 466 GA16033-PA 256..432 200..376 158 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24223-PA 417 GM24223-PA 1..417 1..417 2166 97.1 Plus
Dsec\GM18172-PA 501 GM18172-PA 190..461 139..394 378 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19014-PA 417 GD19014-PA 1..417 1..417 2173 97.6 Plus
Dsim\GD18320-PA 464 GD18320-PA 146..432 84..376 161 24.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14464-PA 427 GJ14464-PA 33..426 20..417 1584 74.3 Plus
Dvir\GJ10873-PA 501 GJ10873-PA 190..461 139..394 386 32.6 Plus
Dvir\GJ14532-PA 466 GJ14532-PA 181..443 135..391 166 23.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11136-PA 420 GK11136-PA 26..418 20..417 1756 80.9 Plus
Dwil\GK14956-PA 502 GK14956-PA 190..461 139..394 382 32.6 Plus
Dwil\GK11931-PA 465 GK11931-PA 121..431 54..376 180 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24299-PA 417 GE24299-PA 1..417 1..417 2002 95 Plus
Dyak\GE14950-PA 501 GE14950-PA 190..461 139..394 379 32.2 Plus
Dyak\GE10826-PA 464 GE10826-PA 146..432 84..376 156 25.2 Plus

SD21818.hyp Sequence

Translation from 150 to 1403

> SD21818.hyp
MKLPTNSQLWRPLLLLRRQRSHDAKAVEAPIHRPVPTSAQLDELERNVVV
RHHKNNVPLIRSLIQELDAGDQHKLRQLQAELEQLPNATHPRLRDYGEEP
RELAQYVHRQLTPQSRLKEFSELARALNLYRMDHLGNYTGHKSYYLTGQL
ATLEQAIIQYALQAVTEHGFKLISVPDILPKEVIESCGMRTEGERTQVYK
LDTGECLSGTSEMALAGFFANKLLSEDQLPLKVTAVSRCYRAETSGLQEE
KGIYRVHQFNKVEMFAICTEEQSEAELEEFKNIEVDLFRRLGLNFRLLDM
PPCELGAPAYQKYDIEAWMPGRQMWGEISSCSNCTDYQARRLGIRYRRSA
DGQILHAHTINGTATAIPRLLIALLESYQKEDGIEIPAVLRPFMDNQELI
TRNKRIPETKLVKFIKA*

SD21818.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-ser-PB 417 CG4938-PB 1..417 1..417 2159 100 Plus
Aats-ser-PA 417 CG4938-PA 1..417 1..417 2159 100 Plus
CG17259-PB 501 CG17259-PB 53..461 16..394 372 26.8 Plus
CG17259-PA 501 CG17259-PA 53..461 16..394 372 26.8 Plus
Slimp-PA 464 CG31133-PA 147..432 85..376 180 25 Plus