Clone SD22845 Report

Search the DGRC for SD22845

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:228
Well:45
Vector:pOT2
Associated Gene/TranscriptCaf1-RB
Protein status:SD22845.pep: gold
Sequenced Size:1570

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Caf1-RB 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

SD22845.complete Sequence

1570 bp assembled on 2011-03-28

GenBank Submission: BT126192.1

> SD22845.complete
ACTTTTGACGCAGACTGAGAAATTGCGTGCCTAAAAGCCTCGAAATGGTG
GATCGCAGCGATAATGCGGAATCCTTCGACGACGCCGTCGAGGAGCGCGT
GATCAATGAGGAGTATAAGATTTGGAAAAAGAACACGCCGTTCCTGTACG
ATCTGGTCATGACGCATGCCCTGGAATGGCCCTCGTTGACTGCCCAGTGG
CTGCCGGACGTGACCAAGCAGGATGGCAAGGACTACTCGGTACATCGTCT
TATACTGGGCACACACACATCTGACGAGCAGAACCATCTACTCATCGCCA
GCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCGATGGTTCGCACTACGAT
AACGAGAAGGGCGAGTTTGGAGGCTTTGGATCGGTGTGCGGCAAAATCGA
AATCGAGATTAAGATCAACCACGAGGGCGAAGTGAACAGGGCCCGCTACA
TGCCCCAGAACGCCTGTGTAATCGCCACCAAGACGCCGTCGAGTGATGTC
CTGGTCTTCGACTACACGAAGCATCCCAGCAAGCCGGAACCGTCTGGCGA
GTGCCAGCCTGACCTGCGGCTGCGCGGTCATCAAAAGGAAGGCTACGGAC
TCTCTTGGAATCCCAACCTCAATGGCTATTTGCTGTCAGCCTCTGATGAT
CACACCATCTGCTTGTGGGACATCAATGCCACACCCAAGGAGCATAGGGT
TATTGATGCCAAGAACATCTTCACCGGCCACACCGCCGTTGTTGAGGACG
TGGCTTGGCATCTGCTACATGAGTCTCTGTTCGGATCGGTGGCTGACGAC
CAGAAGCTGATGATCTGGGACACGCGCAACAACAACACCTCGAAGCCCTC
GCATACAGTGGACGCTCACACAGCGGAAGTCAATTGCTTGAGCTTTAATC
CCTACTCGGAGTTCATTCTGGCCACGGGCTCCGCTGACAAGACTGTAGCT
CTATGGGATCTGCGCAACCTCAAGCTAAAACTACATTCCTTCGAGTCGCA
CAAGGACGAGATCTTCCAAGTGCAGTGGTCGCCGCATAACGAGACTATTC
TCGCCTCCTCCGGCACTGACCGCCGCCTACACGTCTGGGATTTGTCCAAA
ATCGGCGAGGAGCAGAGTACGGAGGATGCTGAGGACGGACCACCCGAGCT
GCTCTTCATCCATGGCGGTCACACTGCCAAGATTAGCGATTTCTCGTGGA
ACCCCAATGAGCCATGGATCATTTGCTCCGTGTCCGAGGACAATATTATG
CAGGTCTGGCAGATGGCCGAGAATGTTTACAACGACGAGGAGCCAGAGAT
TCCCGCCTCCGAGTTAGAAACCAATACCGCTTAAAGCATCTGTTCCGCCT
CCTATAATACACACCAAACTACAACTGAATCCGATAATGTTTTGGCCGTG
CCCCGTGTCCAGCTATCCAGCCTAAATGGCAATGGGTACTCATTTTAATT
TATATATATTTACATATTTTTAAAAACAAAATTTAATTAAGCTCTCATTT
GTCAGCAGATTGTACAATCTATGAATTTTTAATTAAAAATGATTAAAAAG
TCAAAAAAAAAAAAAAAAAA

SD22845.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11051266..11052194 624..1552 4585 99.6 Plus
chr3R 27901430 chr3R 11050598..11051157 66..625 2800 100 Plus
chr3R 27901430 chr3R 11050479..11050544 1..66 330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15226636..15227570 624..1558 4660 99.9 Plus
3R 32079331 3R 15225968..15226527 66..625 2800 100 Plus
3R 32079331 3R 15225849..15225914 1..66 330 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14967467..14968401 624..1558 4660 99.8 Plus
3R 31820162 3R 14966799..14967358 66..625 2800 100 Plus
3R 31820162 3R 14966680..14966745 1..66 330 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:51:03 has no hits.

SD22845.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:52:02 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11050479..11050544 1..66 100 -> Plus
chr3R 11050599..11051156 67..624 100 -> Plus
chr3R 11051267..11052194 625..1552 94   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-28 10:05:29 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 1..1290 45..1334 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:59:28 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 1..1290 45..1334 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:31:45 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 1..1290 45..1334 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-28 10:05:29 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 283..1834 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:59:28 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 274..1825 1..1552 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:45 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 274..1825 1..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:02 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225849..15225914 1..66 100 -> Plus
3R 15225969..15226526 67..624 100 -> Plus
3R 15226637..15227564 625..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:02 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225849..15225914 1..66 100 -> Plus
3R 15225969..15226526 67..624 100 -> Plus
3R 15226637..15227564 625..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:02 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225849..15225914 1..66 100 -> Plus
3R 15225969..15226526 67..624 100 -> Plus
3R 15226637..15227564 625..1552 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:59:28 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051571..11051636 1..66 100 -> Plus
arm_3R 11051691..11052248 67..624 100 -> Plus
arm_3R 11052359..11053286 625..1552 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:13 Download gff for SD22845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14966800..14967357 67..624 100 -> Plus
3R 14967468..14968395 625..1552 100   Plus
3R 14966680..14966745 1..66 100 -> Plus

SD22845.hyp Sequence

Translation from 44 to 1333

> SD22845.hyp
MVDRSDNAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA
QWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH
YDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSS
DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS
DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA
DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL
SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN
IMQVWQMAENVYNDEEPEIPASELETNTA*

SD22845.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-PB 429 CG4236-PB 1..429 1..429 2323 100 Plus
Caf1-PA 430 CG4236-PA 1..430 1..429 2311 99.8 Plus
l(2)09851-PB 456 CG12792-PB 157..444 124..397 336 31.2 Plus
l(2)09851-PA 456 CG12792-PA 157..444 124..397 336 31.2 Plus
Pex7-PB 339 CG6486-PB 22..328 78..405 255 25.6 Plus

SD22845.pep Sequence

Translation from 44 to 1333

> SD22845.pep
MVDRSDNAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA
QWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH
YDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSS
DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS
DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA
DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL
SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN
IMQVWQMAENVYNDEEPEIPASELETNTA*

SD22845.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11355-PA 430 GF11355-PA 1..430 1..429 2290 99.5 Plus
Dana\GF13839-PA 448 GF13839-PA 149..436 124..397 302 29.5 Plus
Dana\GF24344-PA 338 GF24344-PA 22..326 78..405 239 25.8 Plus
Dana\GF16340-PA 832 GF16340-PA 228..431 177..405 203 28.1 Plus
Dana\GF22879-PA 448 GF22879-PA 193..423 167..419 201 26.5 Plus
Dana\GF13839-PA 448 GF13839-PA 154..384 170..408 175 24.8 Plus
Dana\GF22879-PA 448 GF22879-PA 202..448 125..406 159 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16897-PA 430 GG16897-PA 1..430 1..429 2290 99.5 Plus
Dere\GG23179-PA 458 GG23179-PA 159..446 124..397 330 31.5 Plus
Dere\GG14336-PA 345 GG14336-PA 84..334 135..405 229 26.6 Plus
Dere\GG12984-PA 804 GG12984-PA 225..428 177..405 201 27.8 Plus
Dere\GG12938-PA 361 GG12938-PA 66..273 174..410 195 27.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18845-PA 429 GH18845-PA 1..429 1..429 2286 99.1 Plus
Dgri\GH20229-PA 468 GH20229-PA 162..456 124..397 308 29.4 Plus
Dgri\GH15320-PA 335 GH15320-PA 79..329 135..405 240 27.7 Plus
Dgri\GH19503-PA 804 GH19503-PA 225..428 177..405 202 27.8 Plus
Dgri\GH24921-PA 357 GH24921-PA 62..269 174..410 194 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-55-PB 429 CG4236-PB 1..429 1..429 2323 100 Plus
Caf1-55-PA 430 CG4236-PA 1..430 1..429 2311 99.8 Plus
l(2)09851-PB 456 CG12792-PB 157..444 124..397 336 31.2 Plus
l(2)09851-PA 456 CG12792-PA 157..444 124..397 336 31.2 Plus
Pex7-PB 339 CG6486-PB 22..328 78..405 255 25.6 Plus
Pex7-PA 339 CG6486-PA 22..328 78..405 255 25.6 Plus
Wdr33-PB 807 CG1109-PB 226..429 177..405 214 27.4 Plus
Wdr33-PA 807 CG1109-PA 226..429 177..405 214 27.4 Plus
wds-PB 361 CG17437-PB 68..272 176..409 203 27.8 Plus
wds-PA 361 CG17437-PA 68..272 176..409 203 27.8 Plus
CG6724-PA 420 CG6724-PA 239..420 167..360 192 27.2 Plus
CG6724-PB 418 CG6724-PB 242..418 172..360 188 26.8 Plus
Rack1-PC 318 CG7111-PC 12..275 124..419 186 26.2 Plus
Rack1-PD 318 CG7111-PD 12..275 124..419 186 26.2 Plus
Rack1-PA 318 CG7111-PA 12..275 124..419 186 26.2 Plus
CG3436-PC 347 CG3436-PC 54..347 126..409 184 21.9 Plus
CG3436-PA 347 CG3436-PA 54..347 126..409 184 21.9 Plus
ebi-PA 700 CG4063-PA 450..616 179..352 183 28.6 Plus
ebi-PA 700 CG4063-PA 351..563 176..407 176 26.9 Plus
CG10931-PA 345 CG10931-PA 52..251 176..405 175 28.7 Plus
can-PA 942 CG6577-PA 622..780 176..349 175 31 Plus
CG1523-PA 621 CG1523-PA 88..168 273..356 172 42.9 Plus
Taf5-PA 704 CG7704-PA 446..606 176..351 172 31.1 Plus
fzr-PA 478 CG3000-PA 287..457 169..350 169 26.6 Plus
fzr-PB 478 CG3000-PB 287..457 169..350 169 26.6 Plus
Hira-PA 1047 CG12153-PA 22..345 100..396 169 26.8 Plus
Taf5-PA 704 CG7704-PA 489..653 177..356 167 27.2 Plus
nclb-PA 459 CG6751-PA 232..409 228..415 167 26.8 Plus
Rack1-PC 318 CG7111-PC 11..236 176..419 166 25.7 Plus
Rack1-PD 318 CG7111-PD 11..236 176..419 166 25.7 Plus
Rack1-PA 318 CG7111-PA 11..236 176..419 166 25.7 Plus
Ciao1-PA 335 CG12797-PA 12..183 228..414 165 25.5 Plus
Wdr59-PD 969 CG4705-PD 115..360 168..426 165 24.8 Plus
Wdr59-PB 969 CG4705-PB 115..360 168..426 165 24.8 Plus
CG7568-PD 467 CG7568-PD 222..424 178..405 164 25.4 Plus
CG7568-PE 482 CG7568-PE 222..424 178..405 164 25.4 Plus
Wdr24-PB 776 CG7609-PB 70..227 235..407 160 23.1 Plus
Wdr24-PC 777 CG7609-PC 70..227 235..407 160 23.1 Plus
CG3436-PC 347 CG3436-PC 6..253 137..407 157 23.3 Plus
CG3436-PA 347 CG3436-PA 6..253 137..407 157 23.3 Plus
Ciao1-PA 335 CG12797-PA 90..335 167..409 157 21.5 Plus
beta'COP-PA 914 CG6699-PA 76..214 250..405 157 25 Plus
Tango4-PA 482 CG1796-PA 149..328 159..351 155 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22916-PA 429 GI22916-PA 1..429 1..429 2297 99.5 Plus
Dmoj\GI19400-PA 460 GI19400-PA 157..448 124..397 316 30.3 Plus
Dmoj\GI24459-PA 445 GI24459-PA 168..402 143..405 210 26 Plus
Dmoj\GI12919-PA 320 GI12919-PA 115..314 171..405 203 27.3 Plus
Dmoj\GI23774-PA 804 GI23774-PA 226..429 177..405 202 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12530-PA 430 GL12530-PA 1..430 1..429 2287 99.3 Plus
Dper\GL12106-PA 430 GL12106-PA 1..430 1..429 2253 98.1 Plus
Dper\GL21279-PA 422 GL21279-PA 1..422 1..429 2113 94 Plus
Dper\GL21757-PA 442 GL21757-PA 29..441 17..423 1540 69.5 Plus
Dper\GL20061-PA 456 GL20061-PA 157..444 124..397 309 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18051-PA 430 GA18051-PA 1..430 1..429 2290 99.5 Plus
Dpse\GA26389-PB 440 GA26389-PB 27..438 17..422 1539 69.7 Plus
Dpse\GA11814-PA 456 GA11814-PA 157..444 124..397 312 29.5 Plus
Dpse\GA19630-PA 336 GA19630-PA 22..325 78..405 255 26.9 Plus
Dpse\GA10752-PA 812 GA10752-PA 226..429 177..405 203 28.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24205-PA 430 GM24205-PA 1..430 1..429 2293 99.8 Plus
Dsec\GM16519-PA 457 GM16519-PA 158..445 124..397 331 30.8 Plus
Dsec\GM25079-PA 339 GM25079-PA 22..328 78..405 231 25.6 Plus
Dsec\GM10830-PA 808 GM10830-PA 226..429 177..405 201 27.8 Plus
Dsec\GM19230-PA 361 GM19230-PA 66..273 174..410 196 27.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18995-PA 430 GD18995-PA 1..430 1..429 2293 99.8 Plus
Dsim\GD10383-PA 456 GD10383-PA 157..444 124..397 332 30.8 Plus
Dsim\GD14117-PA 339 GD14117-PA 22..328 78..405 243 26.2 Plus
Dsim\GD19809-PA 807 GD19809-PA 226..429 177..405 201 27.8 Plus
Dsim\GD16610-PA 361 GD16610-PA 66..273 174..410 196 27.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23199-PA 429 GJ23199-PA 1..429 1..429 2297 99.5 Plus
Dvir\GJ22462-PA 464 GJ22462-PA 161..452 124..397 314 30 Plus
Dvir\GJ13063-PA 321 GJ13063-PA 116..315 171..405 209 29 Plus
Dvir\GJ16947-PA 358 GJ16947-PA 63..270 174..410 195 27.4 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 53..340 125..401 175 19.3 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 6..251 137..405 164 24.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14487-PA 429 GK14487-PA 1..429 1..429 2303 99.8 Plus
Dwil\GK23014-PA 457 GK23014-PA 156..445 124..397 308 30.3 Plus
Dwil\GK16726-PA 335 GK16726-PA 110..324 171..405 244 30.3 Plus
Dwil\GK13364-PA 820 GK13364-PA 226..429 177..405 200 27.4 Plus
Dwil\GK19416-PA 346 GK19416-PA 49..257 175..409 196 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24278-PA 430 GE24278-PA 1..430 1..429 2290 99.5 Plus
Dyak\l(2)09851-PA 456 GE20561-PA 157..444 124..397 330 32.2 Plus
Dyak\GE20764-PA 340 GE20764-PA 22..329 78..405 231 25.1 Plus
Dyak\GE10153-PA 801 GE10153-PA 225..428 177..405 201 27.8 Plus
Dyak\GE20275-PA 949 GE20275-PA 630..788 176..349 201 34.3 Plus