Clone SD23052 Report

Search the DGRC for SD23052

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:230
Well:52
Vector:pOT2
Associated Gene/TranscriptArt3-RB
Protein status:SD23052.pep: gold
Preliminary Size:1779
Sequenced Size:1814

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6563 2002-12-13 Blastp of sequenced clone
CG6563 2003-01-01 Sim4 clustering to Release 3
Art3 2008-04-29 Release 5.5 accounting
Art3 2008-08-15 Release 5.9 accounting
Art3 2008-12-18 5.12 accounting

Clone Sequence Records

SD23052.complete Sequence

1814 bp (1814 high quality bases) assembled on 2002-12-13

GenBank Submission: BT003167

> SD23052.complete
TGTTCGCGCCGCTCAAAACCCCATTTAGTTGGCATTTATAAATTTGTGAT
CTTCGTCGTGCGATTTGAATTCTTTTCTCTGAAAGCAGGCCAATAGGACT
TGCAAACAAAGATAGCATGAAAGACACCGAGGTCAACGGTTCGAGCCCGT
AAAAGCTTTTATTTCCTGGAGATGATTACTTATTAATCCCATCCCAATGT
AGACAACACCACAGAGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGG
CCAATTCCAGCTCCGACGAAGATGAGTACGATGACATAGATGACGATGAT
GAGCCAATGGACGAAGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGA
AACATCTGCAAACATCTCGGTGGCCATTGACCATCTTGACGCCCGGCATA
AAGTGAATCTGTCCCAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCC
TTTATCAAACTGATAAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCA
GTTATTGTCTGCGGAACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGC
CCGGGGAGTATGAGCCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACA
GACGGCGCTCCGACGCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGC
TGAGCAGTCGCAATTGCTGCAGCAGGCCAACGAGGACATGGAACGCATGC
GCAACGACTACAAGGCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCC
AAAGGTTCCGACCAGAGCGTACCGCGTAACAACGTTTGTCTCGACAACGA
ATACTTCAAAAGCTACGCCCACTTTGGCATTCACCATGAAATGCTCAGCG
ACAAGGTGCGGACCAGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCC
GTTGTTCGGGGCAAGACAGTGTTGGATGTGGGATGCGGCACGGGAATCCT
ATCCATCTTCGCCTCCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATA
ACTCGGACATTGTGTACACCGCCATGGATATCATCAGGAAGAACAAGGTT
GAGAATGTTGAACTGATCAAGGGACGGCTGGAGGACACAGATCTCCCAGA
GACTAAATACGACATTATAATATCCGAATGGATGGGCTATTTTCTTTTGT
ACGAATCAATGCTGGACAGCATTATCTACGCCCGCGAGAATCACCTCAAC
CCCAATGGCATAATACTGCCCAGTCGCTGTACACTCAGTCTCTTGGGCTA
TGGAGACGACACGCTTTATGCCGATGAAGTGGAATTCTGGTCTAACGTTT
ACGAGGTCGACATGAGCGATCTGCGAAAGCAATCAATAGAGGAGCCACTC
ATGCAGGTGGTGGATGCAGAGTTCATGCTGACGGAACCCGAACAGATAGC
TAACTTCGACATAATGACCGTCGATATGAACTATCCAAACTTTACTCACC
AGTTTAGCTTAAAGGTCACGAAGCCGGGACGATTATCCGCCTTTGTCGGT
TACTTTGAAACATTGTTTGAACTACCCTCCCCCGTCATGTTCAGCACATC
ACCATCTGCGACGCCCACCCATTGGAAGCAAACGGTTTTCTTCATCGAGA
ACCCGCAGGTTGTGAAGGAAGGAGACGTCATTTGTGGGAAAATCACGTCA
AGAAGACATAAAGAGGATGTCAGAGGACTTAGTGTGGACATAGAAGTCTT
TGGCAAGAAACACAAATACAATGTGGTTTAATGTGCTTCTTTTTGAATAG
AATTAAATAAAATACGCTTGAAGATCTAAGTTGGTATTTAATTTCAAAAA
AAAAAAAAAAAAAA

SD23052.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RB 1835 Art3-RB 59..1835 1..1777 8885 100 Plus
Art3-RA 1911 Art3-RA 283..1883 202..1802 8005 100 Plus
Art3.a 1782 Art3.a 188..1782 201..1795 7975 100 Plus
Art3-RA 1911 Art3-RA 146..283 1..138 690 100 Plus
Art3.a 1782 Art3.a 59..189 1..131 655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11052217..11054011 1795..1 8945 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227580..15229381 1802..1 9010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14968411..14970212 1802..1 9010 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:36:27 has no hits.

SD23052.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:37:14 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11052217..11054011 1..1795 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:10:19 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 22..1551 202..1731 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:24 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 22..1551 202..1731 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:01 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 22..1551 202..1731 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:00 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 22..1551 202..1731 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:07:11 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 22..1551 202..1731 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:14 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RB 59..1837 1..1779 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:24 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RB 59..1835 1..1777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:01 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RB 28..1804 1..1777 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:01 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RB 59..1837 1..1779 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:07:11 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RB 28..1804 1..1777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:14 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227587..15229381 1..1795 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:14 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227587..15229381 1..1795 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:14 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227587..15229381 1..1795 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:01 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053309..11055103 1..1795 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:42 Download gff for SD23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14968418..14970212 1..1795 100   Minus

SD23052.pep Sequence

Translation from 306 to 1730

> SD23052.pep
MDEGDELTTCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFI
KLINYIRAKKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDG
APTQPSVLELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKG
SDQSVPRNNVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVV
RGKTVLDVGCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVEN
VELIKGRLEDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPN
GIILPSRCTLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQ
VVDAEFMLTEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYF
ETLFELPSPVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRR
HKEDVRGLSVDIEVFGKKHKYNVV*

SD23052.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11802-PA 520 GF11802-PA 54..520 8..474 2020 77.9 Plus
Dana\GF17088-PA 372 GF17088-PA 52..354 166..464 659 43.2 Plus
Dana\GF18899-PA 348 GF18899-PA 25..330 164..464 527 37.5 Plus
Dana\GF14882-PA 369 GF14882-PA 2..343 120..462 481 34.3 Plus
Dana\GF14044-PA 343 GF14044-PA 4..310 164..463 462 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20792-PA 517 GG20792-PA 51..517 8..474 2326 91.2 Plus
Dere\GG17264-PA 397 GG17264-PA 52..379 140..464 646 40.4 Plus
Dere\GG17013-PA 345 GG17013-PA 20..326 163..464 559 39.8 Plus
Dere\GG24386-PA 355 GG24386-PA 33..332 166..465 474 35.4 Plus
Dere\GG10333-PA 341 GG10333-PA 1..310 162..465 418 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18753-PA 507 GH18753-PA 39..506 8..473 1776 70.6 Plus
Dgri\GH19565-PA 382 GH19565-PA 62..367 166..467 659 43.5 Plus
Dgri\GH13621-PA 342 GH13621-PA 2..311 164..465 432 33.5 Plus
Dgri\GH16647-PA 336 GH16647-PA 20..312 168..463 410 33 Plus
Dgri\GH14177-PA 544 GH14177-PA 151..462 164..466 405 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PB 474 CG6563-PB 1..474 1..474 2474 100 Plus
Art3-PA 516 CG6563-PA 43..516 1..474 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 140..464 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 163..464 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..331 163..464 467 35.2 Plus
Art2-PA 355 CG3675-PA 30..331 163..464 467 35.2 Plus
Art8-PA 341 CG16840-PA 3..309 164..464 405 33.9 Plus
Art4-PB 530 CG5358-PB 142..453 164..466 392 31.6 Plus
Art4-PA 530 CG5358-PA 142..453 164..466 392 31.6 Plus
CG32152-PC 357 CG32152-PC 12..320 171..474 334 27.4 Plus
CG32152-PB 357 CG32152-PB 12..320 171..474 334 27.4 Plus
Art9-PA 313 CG9929-PA 15..287 179..446 303 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24669-PA 431 GI24669-PA 1..430 44..473 1599 66.8 Plus
Dmoj\GI23860-PA 387 GI23860-PA 50..369 144..464 664 42 Plus
Dmoj\GI20553-PA 341 GI20553-PA 2..310 164..465 453 34 Plus
Dmoj\GI11605-PA 338 GI11605-PA 23..312 169..463 409 31.6 Plus
Dmoj\GI12675-PA 632 GI12675-PA 316..596 189..466 408 31.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12077-PA 514 GL12077-PA 48..513 8..473 1851 73.7 Plus
Dper\GL12503-PA 235 GL12503-PA 13..234 219..473 853 64.7 Plus
Dper\GL21930-PA 392 GL21930-PA 41..377 138..467 650 39.8 Plus
Dper\GL23322-PA 351 GL23322-PA 11..336 150..470 518 34.6 Plus
Dper\GL16439-PA 366 GL16439-PA 37..338 166..462 494 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19687-PB 481 GA19687-PB 9..480 2..473 1862 73.2 Plus
Dpse\GA19687-PA 514 GA19687-PA 48..513 8..473 1846 73.5 Plus
Dpse\GA19682-PA 392 GA19682-PA 41..377 138..467 650 39.8 Plus
Dpse\GA27221-PA 351 GA27221-PA 14..336 153..470 509 34.8 Plus
Dpse\GA17605-PA 366 GA17605-PA 37..338 166..462 493 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25795-PA 516 GM25795-PA 50..516 8..474 2415 94.4 Plus
Dsec\GM26148-PA 397 GM26148-PA 52..379 140..464 635 39.8 Plus
Dsec\GM25897-PA 444 GM25897-PA 119..434 163..473 537 38.1 Plus
Dsec\GM18100-PA 355 GM18100-PA 33..331 166..464 475 36.2 Plus
Dsec\GM11203-PA 341 GM11203-PA 1..310 162..465 417 33.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20372-PA 477 GD20372-PA 50..477 8..474 2185 87.4 Plus
Dsim\GD20702-PA 397 GD20702-PA 52..379 140..464 646 40.4 Plus
Dsim\GD20467-PA 341 GD20467-PA 16..331 163..473 536 38.1 Plus
Dsim\GD22717-PA 355 GD22717-PA 33..331 166..464 480 36.5 Plus
Dsim\GD22203-PA 325 GD22203-PA 1..301 162..456 413 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24043-PA 508 GJ24043-PA 33..507 2..473 1790 69.4 Plus
Dvir\GJ10573-PA 381 GJ10573-PA 41..363 146..464 660 41.8 Plus
Dvir\GJ13894-PA 341 GJ13894-PA 2..310 164..465 445 33.7 Plus
Dvir\GJ11284-PA 311 GJ11284-PA 1..285 180..463 405 32.2 Plus
Dvir\GJ24202-PA 538 GJ24202-PA 149..460 164..466 404 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12781-PA 517 GK12781-PA 38..516 1..473 1706 65.1 Plus
Dwil\GK13389-PA 382 GK13389-PA 3..364 106..464 680 40.1 Plus
Dwil\GK24448-PA 383 GK24448-PA 51..357 163..464 546 36.8 Plus
Dwil\GK22483-PA 344 GK22483-PA 16..301 165..444 490 35.9 Plus
Dwil\GK14886-PA 340 GK14886-PA 1..310 162..465 439 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26400-PA 516 GE26400-PA 50..516 8..474 2346 91.6 Plus
Dyak\GE24666-PA 378 GE24666-PA 36..360 149..464 648 41.2 Plus
Dyak\GE24405-PA 345 GE24405-PA 20..326 163..464 549 39.5 Plus
Dyak\GE14754-PA 355 GE14754-PA 33..331 166..464 443 34.9 Plus
Dyak\GE13077-PA 341 GE13077-PA 1..310 162..465 424 33.8 Plus

SD23052.hyp Sequence

Translation from 306 to 1730

> SD23052.hyp
MDEGDELTTCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFI
KLINYIRAKKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDG
APTQPSVLELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKG
SDQSVPRNNVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVV
RGKTVLDVGCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVEN
VELIKGRLEDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPN
GIILPSRCTLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQ
VVDAEFMLTEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYF
ETLFELPSPVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRR
HKEDVRGLSVDIEVFGKKHKYNVV*

SD23052.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PB 474 CG6563-PB 1..474 1..474 2474 100 Plus
Art3-PA 516 CG6563-PA 43..516 1..474 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 140..464 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 163..464 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..331 163..464 467 35.2 Plus