Clone SD23244 Report

Search the DGRC for SD23244

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:232
Well:44
Vector:pOT2
Associated Gene/TranscriptCG7911-RA
Protein status:SD23244.pep: gold
Preliminary Size:602
Sequenced Size:1162

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7911 2002-01-01 Sim4 clustering to Release 2
CG7911 2002-05-18 Blastp of sequenced clone
CG7911 2008-04-29 Release 5.5 accounting
CG7911 2008-08-15 Release 5.9 accounting
CG15525 2008-08-15 Release 5.9 accounting
CG15525 2008-12-18 5.12 accounting
CG7911 2008-12-18 5.12 accounting

Clone Sequence Records

SD23244.complete Sequence

1162 bp (1162 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119262

> SD23244.complete
CGCCGTTTTACGGGCACGTGTAGAGTACAAAAGGTTCTTTTATTAATTGA
CTGTACATCTGTGTTCCAAGGCCTGCAAATGGAGTCCGAGTCGTTTTATG
GTGTCACACTCAGCGAGAAGGAGGCCATCGCACAGTTCGAGGTCCCAGAT
GTACCCGAGGAGTACATCGTCCACTCGCACAAGCTCATCATCAAACAGAT
TTCCCTCGGCCCAGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGCGG
AGACGAACATAAACGACGATGGCGAGAAGAAAACCTTGAAGATCCCCATT
GCCGTGTTGAAGGTCGGCGAGACCCGTAGCTTAAGACCAAATGTCGAGTT
CCCCAATGGATCAGTGACCTTCAAACTGGTGCAGGGAAGTGGACCCGTAC
ACGTATGCGGCAAGGTCGAGATGAACTTTGGCGAGTTTGACGACGGTCAG
ATTTACGAGGAGTATTCGGACGAGGAGGAGGATAGCGAACTGGAATTCGA
CGAAGAAGCAGCTCCTCAGACGAACGGCAAGAGTAATAAGAAGAAGTAGA
AACACATTACACTCCAAGAACAAACTTCACATGGGCATGATGGACAACAA
TGGCGTCGGCAAGCTGACACAAGAATCTTTGAAACGCAAGGAGCGTCTGC
AAAAACTCCGGGAACAAGTGCAAAACAAAGGAGGAGACGCTGCCGAGTCC
ACTGAAAAGTTACCCAAACCAGTCTTCCGTAGCTACAAGCCCCAGAATGA
GACCACCGATGGCGAGATTCTAACACAGGAACCCACGGGCAACATAGAAT
CAGCTGTGGAGGATCAATTGAGTCTGCTCCAGCAGCCCATGGTGATAGAT
GAGATTGACATAACCAACCTGGCTCCCCGAAAACCCGACTGGGATCTGAA
GCGGGATGCCAGCAAAAAGTTGGAGCGACTGGAACGACGTACCCAGAAAG
CTATTGCTGAACTCATCCGTGAGCGACTGAAACTGAACCAAATGGAGGAT
ATCAGCCAAGCGGTGAATGTGGCCACGGCTCATGCAGGTGAAAGTGTTCA
GGAGGATTATGACTAGAGCTGAATAATACAACTAACTTTACTAAACTGGT
ACAAAAAACGAAAAAATGCACTAACAATAAGTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

SD23244.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7911-RA 884 CG7911-RA 206..771 1..566 2830 100 Plus
CG15525-RA 745 CG15525-RA 180..745 567..1132 2725 98.7 Plus
sas-6-RA 1684 sas-6-RA 1569..1684 1136..1021 565 99.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25819341..25819755 1132..718 2030 99.3 Minus
chr3R 27901430 chr3R 25826366..25826538 416..244 865 100 Minus
chr3R 27901430 chr3R 25826131..25826284 566..413 770 100 Minus
chr3R 27901430 chr3R 25819818..25819968 717..567 755 100 Minus
chr3R 27901430 chr3R 25826681..25826828 247..100 740 100 Minus
chr3R 27901430 chr3R 25826957..25827059 103..1 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29996957..29997375 1136..718 2035 99 Minus
3R 32079331 3R 30003988..30004160 416..244 865 100 Minus
3R 32079331 3R 30003753..30003906 566..413 770 100 Minus
3R 32079331 3R 30004303..30004450 247..100 740 100 Minus
3R 32079331 3R 29997438..29997588 717..567 710 98 Minus
3R 32079331 3R 30004579..30004681 103..1 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29737788..29738206 1136..718 2035 99 Minus
3R 31820162 3R 29744819..29744991 416..244 865 100 Minus
3R 31820162 3R 29744584..29744737 566..413 770 100 Minus
3R 31820162 3R 29745134..29745281 247..100 740 100 Minus
3R 31820162 3R 29738269..29738419 717..567 710 98 Minus
3R 31820162 3R 29745410..29745512 103..1 515 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:46:14 has no hits.

SD23244.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:47:04 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25819341..25819755 718..1132 99 <- Minus
chr3R 25819818..25819966 569..717 100 <- Minus
chr3R 25826131..25826282 415..568 98 <- Minus
chr3R 25826368..25826535 247..414 100 <- Minus
chr3R 25826682..25826827 101..246 100 <- Minus
chr3R 25826960..25827059 1..100 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:10:21 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RB 1..471 79..549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:55 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 1..471 79..549 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:20:00 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 1..471 79..549 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:31:38 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RB 1..471 79..549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:46 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 1..471 79..549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:13:15 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RB 1..1130 1..1132 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:55 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 181..757 1..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:00 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 181..757 1..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:31:38 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RB 1..1130 1..1132 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:46 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
CG7911-RA 181..757 1..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:04 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29996961..29997375 718..1132 99 <- Minus
3R 29997438..29997586 569..717 97 <- Minus
3R 30003753..30003904 415..568 98 <- Minus
3R 30003990..30004157 247..414 100 <- Minus
3R 30004304..30004449 101..246 100 <- Minus
3R 30004582..30004681 1..100 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:04 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29996961..29997375 718..1132 99 <- Minus
3R 29997438..29997586 569..717 97 <- Minus
3R 30003753..30003904 415..568 98 <- Minus
3R 30003990..30004157 247..414 100 <- Minus
3R 30004304..30004449 101..246 100 <- Minus
3R 30004582..30004681 1..100 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:04 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29996961..29997375 718..1132 99 <- Minus
3R 29997438..29997586 569..717 97 <- Minus
3R 30003753..30003904 415..568 98 <- Minus
3R 30003990..30004157 247..414 100 <- Minus
3R 30004304..30004449 101..246 100 <- Minus
3R 30004582..30004681 1..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:00 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25829712..25829879 247..414 100 <- Minus
arm_3R 25830026..25830171 101..246 100 <- Minus
arm_3R 25830304..25830403 1..100 100   Minus
arm_3R 25823160..25823308 569..717 97 <- Minus
arm_3R 25829475..25829626 415..568 98 <- Minus
arm_3R 25822683..25823097 718..1132 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:14 Download gff for SD23244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29737792..29738206 718..1132 99 <- Minus
3R 29738269..29738417 569..717 97 <- Minus
3R 29744584..29744735 415..568 98 <- Minus
3R 29744821..29744988 247..414 100 <- Minus
3R 29745135..29745280 101..246 100 <- Minus
3R 29745413..29745512 1..100 100   Minus

SD23244.hyp Sequence

Translation from 0 to 548

> SD23244.hyp
RRFTGTCRVQKVLLLIDCTSVFQGLQMESESFYGVTLSEKEAIAQFEVPD
VPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAETNINDDGEKKTLKIPI
AVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPVHVCGKVEMNFGEFDDGQ
IYEEYSDEEEDSELEFDEEAAPQTNGKSNKKK*

SD23244.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7911-PB 156 CG7911-PB 1..156 27..182 804 100 Plus
CG7911-PA 156 CG7911-PA 1..156 27..182 804 100 Plus
Nlp-PB 152 CG7917-PB 1..152 27..182 283 45.7 Plus
Nlp-PA 152 CG7917-PA 1..152 27..182 283 45.7 Plus

SD23244.pep Sequence

Translation from 78 to 548

> SD23244.pep
MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTG
EFNVVQAETNINDDGEKKTLKIPIAVLKVGETRSLRPNVEFPNGSVTFKL
VQGSGPVHVCGKVEMNFGEFDDGQIYEEYSDEEEDSELEFDEEAAPQTNG
KSNKKK*

SD23244.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16212-PA 154 GF16212-PA 1..154 1..156 732 89.7 Plus
Dana\GF18816-PA 152 GF18816-PA 1..101 1..111 238 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11978-PA 156 GG11978-PA 1..156 1..156 791 97.4 Plus
Dere\GG11720-PA 152 GG11720-PA 1..101 1..111 249 51.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22165-PA 152 GH22165-PA 1..152 1..156 593 83.3 Plus
Dgri\GH18574-PA 154 GH18574-PA 1..104 1..112 251 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Nph-PB 156 CG7911-PB 1..156 1..156 804 100 Plus
Nph-PA 156 CG7911-PA 1..156 1..156 804 100 Plus
Nlp-PB 152 CG7917-PB 1..152 1..156 283 45.7 Plus
Nlp-PA 152 CG7917-PA 1..152 1..156 283 45.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21966-PA 156 GI21966-PA 1..156 1..156 727 86.5 Plus
Dmoj\GI10803-PA 153 GI10803-PA 1..104 1..112 255 50.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13489-PA 157 GL13489-PA 1..156 1..156 667 86.5 Plus
Dper\GL14018-PA 156 GL14018-PA 1..101 1..111 251 51.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20679-PA 157 GA20679-PA 1..156 1..156 667 86.5 Plus
Dpse\GA20685-PA 156 GA20685-PA 1..101 1..111 251 51.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12196-PA 156 GM12196-PA 1..156 1..156 806 100 Plus
Dsec\GM12851-PA 152 GM12851-PA 1..101 1..111 249 51.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17477-PA 156 GD17477-PA 1..156 1..156 806 100 Plus
Dsim\GD21493-PA 152 GD21493-PA 1..101 1..111 249 51.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14325-PA 156 GJ14325-PA 1..156 1..156 658 85.9 Plus
Dvir\GJ14400-PA 154 GJ14400-PA 1..104 1..112 253 50 Plus
Dvir\GJ16333-PA 120 GJ16333-PA 8..105 6..112 205 41.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13375-PA 154 GK13375-PA 1..154 1..156 594 77.6 Plus
Dwil\GK13921-PA 153 GK13921-PA 1..101 1..111 251 52.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23428-PA 156 GE23428-PA 1..156 1..156 794 98.1 Plus
Dyak\GE10848-PA 152 GE10848-PA 1..101 1..111 249 51.4 Plus