Clone SD23424 Report

Search the DGRC for SD23424

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:234
Well:24
Vector:pOT2
Associated Gene/TranscriptCG5044-RB
Protein status:SD23424.pep: gold
Sequenced Size:1676

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5044-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

SD23424.complete Sequence

1676 bp assembled on 2011-03-25

GenBank Submission: BT126275.1

> SD23424.complete
ACACAACATTACTGACGACAGCCGCTCAAAATGCAGGGCCCAATTCAAAG
GTTGGTGTACACATTTGGTCATCGCACCTGTAGCCAATTGCCGATGATCG
GCGGAGCAACGATATCCCAAACAAAACCAACAACAATGGCTCTCTCCGTT
CGCCAATCCTCCTCCTCCGTGCTGGCCACGGAGTCCTCTAACAAGGGAAT
GATTATTCTGAACCGGCCCAAGGCGCTTAACGCCATCAACTTGGAGATGG
TACGCAAGATCTACAAGCACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTG
GTGATCATCAAGGGCACAGGTGACAAGGCCTTCTGCGCCGGTGGAGATGT
GCGCGCTCTGGTCGAGGCTGGCCCTACGGATGAGTCGAAGAGCTTCTTCC
GGGAGGAGTACAGCACGAATGCCCTGATCGGAAACTATAAGATTCCCTAC
ATCGCCATCATTGACGGTATTACCATGGGCGGTGGCGTGGGTCTGAGTGT
GCATGGCAAGTACCGGGTGGCCAGCGATCGGACACTGTTCGCCATGCCCG
AGACGGCGATTGGCCTCTTCCCGGATGTGGGTGGATCATACTTCCTGCCT
CGACTGCAGGGAAAGCTGGGCCTCTATCTGGGTCTCACAGGATATCGACT
GCGCGGAGCCGATGTCTATTACTCAGGCATTGCTACGCACTACTGCGAGA
GCAGCAAGATCCCTGATCTGGAGACGGCTCTCCTTAACTGCCCGGATGCG
GATGATGTTCCTGAGCTGCTGCAGAAGTACCATTCCCCGCCAGAAAAGCC
CTTCTCGCTGCAGCCTGTCCTGGAGCAGATCAACAAGAATTTTTCAGCGG
ACTCGGTGGAGGGGATTCTAGAGAATCTGCAGAACGATGGCAGTGAATGG
GCCAAGAAGACGCTTGAGACGCTCTCGAAGATGTCTCCCACCTCGATGAA
GGTTACGTTCCGTCAGTTGGAGCTCGGATCACAGCTGTCGCTGGCTCAGT
GTCTTATTATGGAATATCGTCTGGCCGTGCGTCATCTGGAGCGAAGTGAT
TTCAAGGAGGGAGTGCGCGCCCTACTCATCGACAAGGATCAGAAGCCCCA
GTGGCAGCCAACCAAGCTGGCCGATGTTACTGAGGAACATGTGCAGTGGT
TTTTCCGCAAGCTGCCGGACACCGAGGAACTCAAGCTGTAATGTAGCAAG
CTTAGTTTTGTTTTTGTTTGAGCCTTGGCATCCAATCCTGTTTGTCTTCC
GTTGAGCCGCTCATTCTTATATGCACACAACTTAATATCTTTGTATATAT
CATTGCAAGCTTGAGTTATGTTATGCATGGTTCCTTGCCTGCCGTTTTGC
AATATTCTTTATATATCTTTAGCGTTCTGTGGCCACAGTTTGATGAGTTC
TGTCGGCTAATTTTCCGCAATCTCTTCTCTGTTTCATTCCAACAGCGAAT
AACTACGAGGAAGAATCCTATTCGCCGGTATTTACCAATAACGATTGTGA
AATTCAATGCATTTAAATATATGATATACATATATGCCTATCTATATATA
TTATATACAATTCGTAGTCCTAATACAATCAATAATTGTGCCTAAAGAAT
CGTTAGAATTCGTTTACCAAGAATAAAAAGAAGTGTATACGTTTAATAAA
AAAAAACAAAAAAAAAAAAAAAAAAA

SD23424.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11182024..11182909 33..918 4400 99.8 Plus
chr3R 27901430 chr3R 11183172..11183900 917..1649 3510 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357389..15358274 33..918 4400 99.8 Plus
3R 32079331 3R 15358537..15359265 917..1649 3510 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15098220..15099105 33..918 4400 99.7 Plus
3R 31820162 3R 15099368..15100096 917..1649 3520 98.9 Plus
3R 31820162 3R 15098119..15098151 1..33 165 100 Plus
Blast to na_te.dros performed 2019-03-16 22:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 596..682 1566..1652 119 62.5 Plus

SD23424.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:00:57 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11181923..11181955 1..33 100 -> Plus
chr3R 11182025..11182909 34..918 99 -> Plus
chr3R 11183174..11183900 919..1649 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-11 16:14:43 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 1..1161 31..1191 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:02:40 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 1..1161 31..1191 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:34:33 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 1..1161 31..1191 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-11 16:14:43 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 44..1683 1..1644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:02:40 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 60..1702 1..1647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:33 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RB 60..1702 1..1647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:57 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357288..15357320 1..33 100 -> Plus
3R 15357390..15358274 34..918 99 -> Plus
3R 15358539..15359265 919..1649 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:57 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357288..15357320 1..33 100 -> Plus
3R 15357390..15358274 34..918 99 -> Plus
3R 15358539..15359265 919..1649 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:57 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357288..15357320 1..33 100 -> Plus
3R 15357390..15358274 34..918 99 -> Plus
3R 15358539..15359265 919..1649 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:02:40 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183010..11183042 1..33 100 -> Plus
arm_3R 11183112..11183996 34..918 99 -> Plus
arm_3R 11184261..11184987 919..1649 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:54 Download gff for SD23424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15098221..15099105 34..918 99 -> Plus
3R 15099370..15100096 919..1649 98   Plus
3R 15098119..15098151 1..33 100 -> Plus

SD23424.pep Sequence

Translation from 30 to 1190

> SD23424.pep
MQGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLAT
ESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKA
FCAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMG
GGVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYL
GLTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKY
HSPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSK
MSPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLI
DKDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*

SD23424.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23000-PA 351 GF23000-PA 1..351 36..386 1788 94 Plus
Dana\GF11161-PA 293 GF11161-PA 43..230 48..229 204 29.8 Plus
Dana\GF11465-PA 299 GF11465-PA 43..225 51..229 172 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16921-PA 385 GG16921-PA 2..385 3..386 2004 97.1 Plus
Dere\GG22466-PA 294 GG22466-PA 25..214 38..219 207 31.1 Plus
Dere\GG22562-PA 299 GG22562-PA 51..225 57..229 174 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16630-PA 354 GH16630-PA 6..354 39..386 1656 87.1 Plus
Dgri\GH20865-PA 293 GH20865-PA 46..213 51..219 186 31 Plus
Dgri\GH22640-PA 298 GH22640-PA 53..224 60..229 170 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PB 386 CG5044-PB 1..386 1..386 1991 100 Plus
CG5044-PA 385 CG5044-PA 2..385 3..386 1981 100 Plus
Echs1-PA 295 CG6543-PA 45..215 48..219 205 31.6 Plus
Echs1-PB 295 CG6543-PB 45..215 48..219 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 57..229 174 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22035-PA 354 GI22035-PA 3..354 36..386 1664 87.8 Plus
Dmoj\GI20973-PA 293 GI20973-PA 5..213 18..219 187 27.9 Plus
Dmoj\GI21154-PA 301 GI21154-PA 56..227 60..229 173 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13727-PA 394 GL13727-PA 1..394 1..386 1795 87.8 Plus
Dper\GL16995-PA 296 GL16995-PA 58..216 50..219 148 29.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18617-PA 394 GA18617-PA 1..394 1..386 1795 87.8 Plus
Dpse\GA19673-PB 296 GA19673-PB 49..216 51..219 207 32.2 Plus
Dpse\GA19673-PA 296 GA19673-PA 49..216 51..219 207 32.2 Plus
Dpse\GA21314-PA 298 GA21314-PA 42..224 51..229 166 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24227-PA 351 GM24227-PA 1..351 36..386 1843 98.3 Plus
Dsec\GM20252-PA 294 GM20252-PA 25..214 38..219 201 30.6 Plus
Dsec\GM20345-PA 233 GM20345-PA 2..159 71..229 151 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19018-PA 351 GD19018-PA 1..351 36..386 1852 98.9 Plus
Dsim\GD25738-PA 294 GD25738-PA 25..214 38..219 201 30.6 Plus
Dsim\GD25824-PA 299 GD25824-PA 51..225 57..229 172 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10482-PA 354 GJ10482-PA 3..354 36..386 1668 87.8 Plus
Dvir\GJ20693-PA 293 GJ20693-PA 46..213 51..219 184 30.5 Plus
Dvir\GJ21004-PA 281 GJ21004-PA 25..207 51..229 178 28.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11777-PA 351 GK11777-PA 1..351 36..386 1734 90.3 Plus
Dwil\GK17937-PA 295 GK17937-PA 48..215 51..219 206 32.2 Plus
Dwil\GK15915-PA 302 GK15915-PA 46..228 51..229 184 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24304-PA 351 GE24304-PA 1..351 36..386 1855 98.9 Plus
Dyak\GE13337-PA 294 GE13337-PA 25..214 38..219 211 31.6 Plus
Dyak\GE13432-PA 299 GE13432-PA 51..225 57..229 179 29 Plus

SD23424.hyp Sequence

Translation from 30 to 1190

> SD23424.hyp
MQGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLAT
ESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKA
FCAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMG
GGVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYL
GLTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKY
HSPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSK
MSPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLI
DKDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*

SD23424.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PB 386 CG5044-PB 1..386 1..386 1991 100 Plus
CG5044-PA 385 CG5044-PA 2..385 3..386 1981 100 Plus
CG6543-PA 295 CG6543-PA 45..215 48..219 205 31.6 Plus
CG6543-PB 295 CG6543-PB 45..215 48..219 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 57..229 174 28.4 Plus