Clone SD23574 Report

Search the DGRC for SD23574

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:235
Well:74
Vector:pOT2
Associated Gene/TranscriptCG42806-RB
Protein status:SD23574.pep: gold
Sequenced Size:806

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG42806-RA 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

SD23574.complete Sequence

806 bp assembled on 2011-03-18

GenBank Submission: BT126233.1

> SD23574.complete
CTCCACGCCAACGGAACGCTCGAGCAGCCAGCGGCAGGCAGTAGCAGCAG
CAGTGCAGAGCGCAATATATAGAACATTTGAGAGAAAAGAAATAAAAGGA
GCCAAGTCAGACGGGGCCCCCAGCGGTGGTAGTAGAAGTACGGAAAAGCA
CGCGCGTCATCGTAAAAAACGTGCTACGAAATCGCAGGGAGACGGGCGGT
AATAGCAAATAAATTACATAAAAACCACGGAGGAGCAATCACAGCATAAG
AATGACCGATACCAGTGCAAATAATTTGGATGTATCGGTGGATGTGGTCT
GGCCGACGATAATTGTCCTGGCCATGCTGGTCATAAATGGCTTCGTTTTC
GCCTACATTATGCGCAAGCGGCGGGAATACAAATGCCAGGAGGAGGAGCT
GCAGCAACAACAACAACCTGTTCCACATTCCTCCTATGCGGCCACTTCGA
CAACGGAACGGCATGCGGATGCGGATCAGGAGGACGATAGCTGTGCCATC
GAGATGGAGCGACTGTAGGGATGGAGATCGCACTAGCTAAGCTCTCTGAT
ACTCAACTACTATCGTCCAAGCTTCTCAACTGCAACGAAGTTTCCTAAGC
CACATATGTAGTATATCTAGATTGATAGATACAAAACGTATACGTCGAGT
GCCTGGATATCACATCGGATCGCACGTGCATTTAATTACGGTGTTTTTAA
GTTGTTAACTCTATCTGCATATATCGCAAATTCAAATTTTCTACAAAAGT
ATACAATAAATGTGTGAATTTTATCATGCGGCAACGAGAAAAAAAAAAAA
AAAAAA

SD23574.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9851992..9852779 1..788 3925 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13964668..13965457 1..790 3950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13965867..13966656 1..790 3950 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:33:16 has no hits.

SD23574.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:34:03 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9851992..9852779 1..788 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:23 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 1..267 252..518 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:50 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 1..267 252..518 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:08 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 1..267 252..518 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:22 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 1..707 1..707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:50 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 16..803 1..788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:08 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG42806-RB 16..803 1..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:03 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13964668..13965455 1..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:03 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13964668..13965455 1..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:03 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13964668..13965455 1..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:50 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9852173..9852960 1..788 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:09 Download gff for SD23574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13965867..13966654 1..788 100   Plus

SD23574.hyp Sequence

Translation from 251 to 517

> SD23574.hyp
MTDTSANNLDVSVDVVWPTIIVLAMLVINGFVFAYIMRKRREYKCQEEEL
QQQQQPVPHSSYAATSTTERHADADQEDDSCAIEMERL*

SD23574.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG42806-PB 88 CG42806-PB 1..88 1..88 453 100 Plus

SD23574.pep Sequence

Translation from 251 to 517

> SD23574.pep
MTDTSANNLDVSVDVVWPTIIVLAMLVINGFVFAYIMRKRREYKCQEEEL
QQQQQPVPHSSYAATSTTERHADADQEDDSCAIEMERL*

SD23574.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42806-PB 88 CG42806-PB 1..88 1..88 453 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30444-PB 61 GA30444-PB 1..44 1..44 162 68.2 Plus