BDGP Sequence Production Resources |
Search the DGRC for SD23839
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 238 |
Well: | 39 |
Vector: | pOT2 |
Associated Gene/Transcript | Roc1a-RA |
Protein status: | SD23839.pep: gold |
Preliminary Size: | 692 |
Sequenced Size: | 1181 |
Gene | Date | Evidence |
---|---|---|
CG16982 | 2002-01-01 | Sim4 clustering to Release 2 |
CG16982 | 2002-05-18 | Blastp of sequenced clone |
CG16982 | 2003-01-01 | Sim4 clustering to Release 3 |
Roc1a | 2008-04-29 | Release 5.5 accounting |
Roc1a | 2008-08-15 | Release 5.9 accounting |
Roc1a | 2008-12-18 | 5.12 accounting |
1181 bp (1181 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119265
> SD23839.complete CTTTACGAGAAAAAGCGGCGGTCACACTGCTTGAGCCTCACTGCGAGTGG TTTTCTATTAAAACGAAAAGGATAGGGACAGAAAAGCCAAAACTACGTTA GTTGTGAAAATTGCATTTGTGTTGCGAGAGTTTTGTCAGGATAAATAGGT GTATTTCCACCATGGAAGTCGACGAGGATGGATACGAGGTTCCCTCCAGC AGCAGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAACGCCGT GGCTCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTGCCGCA ACCACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGTCCGCC ACTAGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCCTTCCA TTTCCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCCACTGG ACAACCGCGAGTGGGATTTCCAGAAGTACGGCCACTAAAATCTACAAAAC CCCCAAGACCCACCAGATGGAGGGAGCAGCACTTCCCGCAAGCTAGATGA TGGAGGCCTGCTTCATCTGGACATTTGAATACCTTTTTAGATCTTAAGCT AGTGGGGCGATTCGAGTGAACTGGTAGCCTTTAGGAGCACAGTTACCGAT TTCCGAGACTCCCCGGGAAGCGCACCTTTTTGTAACGCGTTAAATAAAAG CTGTAGAAGATGGAGAAGACTAGACGGATGTTTCTACCTTTCACCCTTTG GAGTCTATATTCACTGTGACGATGGCATCTTACCGCGAAATCCACTAGCT AGTCGTGCCTAAATTTTCAGAGTATATAACTCATGACTGGCAAAAAATAT GATTGGGTCATTGGGTTCCATAAATGTAGCTCTGCTTAGTTATCCTTGGA TGGCATTTGAAGAGGATCTGGCTAGTTCAAACTAGTTTAGTTTTGCTTAA CTATATGCGTCATGACCAGCTCCAGATCAGGTTGTTCAGATATATGAAAG TAGTTTCGTAAAAACAAATCAAAATCAGTCGATGCAAAGAAAGAGCTGCG TTTGTAAAAACTAAATGTTCTTTTTAGTTTATTATGAATGTTTTGCGGCC GCGGCAGCTTAGAAAATAATACACATTAGTTACAGATATGAATAAAGTAT ATGGTATATATCAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Roc1a-RA | 1243 | Roc1a-RA | 68..1232 | 1..1165 | 5825 | 100 | Plus |
Roc1a.a | 1327 | Roc1a.a | 389..1316 | 238..1165 | 4640 | 100 | Plus |
Roc1a.a | 1327 | Roc1a.a | 68..306 | 1..239 | 1195 | 100 | Plus |
Suv4-20.a | 5546 | Suv4-20.a | 5435..5546 | 1165..1054 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 541688..542583 | 267..1162 | 4480 | 100 | Plus |
chrX | 22417052 | chrX | 541273..541511 | 1..239 | 1195 | 100 | Plus |
chr3L | 24539361 | chr3L | 358087..358351 | 220..487 | 435 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 655800..656698 | 267..1165 | 4495 | 100 | Plus |
X | 23527363 | X | 655385..655623 | 1..239 | 1195 | 100 | Plus |
3L | 28103327 | 3L | 358271..358398 | 360..487 | 310 | 82.8 | Plus |
3L | 28103327 | 3L | 358170..358253 | 256..339 | 240 | 85.7 | Plus |
X | 23527363 | X | 655706..655735 | 238..267 | 150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 4486..4545 | 981..1042 | 115 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 541273..541511 | 1..239 | 100 | -> | Plus |
chrX | 541596..541623 | 240..267 | 100 | -> | Plus |
chrX | 541689..542583 | 268..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..327 | 162..488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..327 | 162..488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..327 | 162..488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..327 | 162..488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..327 | 162..488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..1162 | 1..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..1162 | 1..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RD | 1..1145 | 18..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RA | 1..1162 | 1..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Roc1a-RD | 1..1145 | 18..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 647287..647525 | 1..239 | 100 | -> | Plus |
X | 647610..647637 | 240..267 | 100 | -> | Plus |
X | 647703..648597 | 268..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 647287..647525 | 1..239 | 100 | -> | Plus |
X | 647610..647637 | 240..267 | 100 | -> | Plus |
X | 647703..648597 | 268..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 647287..647525 | 1..239 | 100 | -> | Plus |
X | 647610..647637 | 240..267 | 100 | -> | Plus |
X | 647703..648597 | 268..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 541320..541558 | 1..239 | 100 | -> | Plus |
arm_X | 541643..541670 | 240..267 | 100 | -> | Plus |
arm_X | 541736..542630 | 268..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 655385..655623 | 1..239 | 100 | -> | Plus |
X | 655708..655735 | 240..267 | 100 | -> | Plus |
X | 655801..656695 | 268..1162 | 100 | Plus |
Translation from 161 to 487
> SD23839.hyp MEVDEDGYEVPSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE WDFQKYGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Roc1a-PD | 108 | CG16982-PD | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PA | 108 | CG16982-PA | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PC | 136 | CG16982-PC | 1..136 | 1..108 | 580 | 79.4 | Plus |
Roc1b-PA | 122 | CG16988-PA | 21..121 | 9..107 | 395 | 67.6 | Plus |
Roc2-PB | 113 | CG8998-PB | 6..112 | 5..107 | 274 | 43.9 | Plus |
Translation from 161 to 487
> SD23839.pep MEVDEDGYEVPSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE WDFQKYGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13953-PA | 108 | GF13953-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dana\GF22186-PA | 108 | GF22186-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dana\GF21496-PA | 146 | GF21496-PA | 40..146 | 2..108 | 468 | 79.4 | Plus |
Dana\GF20771-PA | 154 | GF20771-PA | 47..154 | 1..108 | 445 | 75.9 | Plus |
Dana\GF20493-PA | 194 | GF20493-PA | 88..194 | 2..108 | 433 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12803-PA | 108 | GG12803-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dere\GG14721-PA | 122 | GG14721-PA | 16..122 | 1..108 | 371 | 62 | Plus |
Dere\GG22636-PA | 113 | GG22636-PA | 3..112 | 4..107 | 245 | 43.6 | Plus |
Dere\GG24061-PA | 85 | GG24061-PA | 2..85 | 21..106 | 160 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17811-PA | 108 | GH17811-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dgri\GH10088-PA | 159 | GH10088-PA | 70..159 | 19..108 | 390 | 76.7 | Plus |
Dgri\GH15458-PA | 128 | GH15458-PA | 24..128 | 2..108 | 380 | 67.3 | Plus |
Dgri\GH22607-PA | 128 | GH22607-PA | 24..128 | 2..108 | 380 | 67.3 | Plus |
Dgri\GH23818-PA | 128 | GH23818-PA | 24..128 | 2..108 | 380 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Roc1a-PD | 108 | CG16982-PD | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PA | 108 | CG16982-PA | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PC | 136 | CG16982-PC | 1..136 | 1..108 | 580 | 79.4 | Plus |
Roc1b-PA | 122 | CG16988-PA | 21..121 | 9..107 | 395 | 67.6 | Plus |
Roc2-PB | 113 | CG8998-PB | 6..112 | 5..107 | 274 | 43.9 | Plus |
Roc2-PA | 113 | CG8998-PA | 6..112 | 5..107 | 274 | 43.9 | Plus |
lmgA-PB | 85 | CG34440-PB | 5..82 | 24..103 | 189 | 37.3 | Plus |
lmgA-PA | 85 | CG18042-PA | 5..82 | 24..103 | 189 | 37.3 | Plus |
lmgA-PD | 85 | CG34440-PD | 5..82 | 24..103 | 189 | 37.3 | Plus |
lmgA-PC | 85 | CG34440-PC | 5..82 | 24..103 | 189 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16422-PA | 108 | GI16422-PA | 1..108 | 1..108 | 562 | 97.2 | Plus |
Dmoj\GI20142-PA | 147 | GI20142-PA | 57..146 | 18..107 | 410 | 80 | Plus |
Dmoj\GI14277-PA | 159 | GI14277-PA | 70..158 | 19..107 | 403 | 80.9 | Plus |
Dmoj\GI16738-PA | 130 | GI16738-PA | 27..130 | 2..108 | 373 | 67.3 | Plus |
Dmoj\GI21036-PA | 111 | GI21036-PA | 13..110 | 11..107 | 245 | 47.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13357-PA | 108 | GL13357-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dper\GL14784-PA | 284 | GL14784-PA | 179..283 | 3..107 | 427 | 75.2 | Plus |
Dper\GL22584-PA | 123 | GL22584-PA | 16..123 | 2..108 | 372 | 65.1 | Plus |
Dper\GL10569-PA | 102 | GL10569-PA | 1..101 | 1..107 | 310 | 54.2 | Plus |
Dper\GL10672-PA | 113 | GL10672-PA | 6..112 | 5..107 | 244 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22841-PA | 108 | GA22841-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dpse\GA23017-PA | 150 | GA23017-PA | 45..150 | 3..108 | 405 | 72.6 | Plus |
Dpse\GA14260-PA | 123 | GA14260-PA | 16..123 | 2..108 | 372 | 65.1 | Plus |
Dpse\GA24410-PA | 102 | GA24410-PA | 1..101 | 1..107 | 310 | 54.2 | Plus |
Dpse\GA21465-PA | 113 | GA21465-PA | 6..112 | 5..107 | 244 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19082-PA | 108 | GM19082-PA | 1..108 | 1..108 | 577 | 100 | Plus |
Dsec\GM14339-PA | 122 | GM14339-PA | 16..121 | 1..107 | 365 | 61.7 | Plus |
Dsec\GM20415-PA | 113 | GM20415-PA | 6..112 | 5..107 | 246 | 43.9 | Plus |
Dsec\GM12813-PA | 85 | GM12813-PA | 2..85 | 21..106 | 160 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16520-PA | 108 | GD16520-PA | 1..108 | 1..108 | 577 | 100 | Plus |
Dsim\GD11014-PA | 122 | GD11014-PA | 16..121 | 1..107 | 365 | 61.7 | Plus |
Dsim\GD25891-PA | 113 | GD25891-PA | 6..112 | 5..107 | 246 | 43.9 | Plus |
Dsim\GD22391-PA | 85 | GD22391-PA | 2..85 | 21..106 | 160 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15825-PA | 108 | GJ15825-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dvir\GJ16241-PA | 149 | GJ16241-PA | 53..148 | 12..107 | 412 | 77.1 | Plus |
Dvir\GJ22419-PA | 117 | GJ22419-PA | 27..116 | 18..107 | 407 | 81.1 | Plus |
Dvir\GJ12485-PA | 131 | GJ12485-PA | 24..131 | 2..108 | 373 | 66.1 | Plus |
Dvir\GJ15904-PA | 104 | GJ15904-PA | 11..103 | 14..104 | 296 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16427-PA | 108 | GK16427-PA | 1..108 | 1..108 | 558 | 96.3 | Plus |
Dwil\GK15981-PA | 112 | GK15981-PA | 16..112 | 12..108 | 476 | 89.7 | Plus |
Dwil\GK20831-PA | 112 | GK20831-PA | 16..112 | 12..108 | 476 | 89.7 | Plus |
Dwil\GK10799-PA | 112 | GK10799-PA | 16..112 | 12..108 | 448 | 84.5 | Plus |
Dwil\GK18099-PA | 160 | GK18099-PA | 54..159 | 1..107 | 429 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16630-PA | 111 | GE16630-PA | 4..111 | 1..108 | 560 | 96.3 | Plus |
Dyak\GE21084-PA | 122 | GE21084-PA | 16..122 | 1..108 | 385 | 64.8 | Plus |
Dyak\GE17622-PA | 137 | GE17622-PA | 31..137 | 1..108 | 367 | 63 | Plus |
Dyak\GE13508-PA | 113 | GE13508-PA | 6..112 | 5..107 | 245 | 43.9 | Plus |
Dyak\GE10872-PA | 85 | GE10872-PA | 2..85 | 21..106 | 160 | 34.8 | Plus |