Clone SD23896 Report

Search the DGRC for SD23896

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:96
Vector:pOT2
Associated Gene/TranscriptVps16B-RA
Protein status:SD23896.pep: gold
Preliminary Size:1347
Sequenced Size:1577

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18112 2002-01-01 Sim4 clustering to Release 2
CG18112 2002-12-11 Blastp of sequenced clone
CG18112 2003-01-01 Sim4 clustering to Release 3
Vps16B 2008-04-29 Release 5.5 accounting
Vps16B 2008-08-15 Release 5.9 accounting
Vps16B 2008-12-18 5.12 accounting

Clone Sequence Records

SD23896.complete Sequence

1577 bp (1577 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003209

> SD23896.complete
TCGTCACAAAATAGAACCTTACATTTAATAACGAATAATAACAATGGACC
TGCAATTGGACAGCGAAAGCTATTGGAACCGATCCTCTCGCGCAGCGTTC
AGCTTCGACGACGAAGACGAGGTGGACCTCGCCCCGGATCTGGTCAGCAA
TGGCATCCTCGCCGACGACACCATTTCGGAGGCCAGCTTCAATAACAGTG
TCGCCCTGAATCTCTCGATCAAATCCATTCTGAGCGAGGAGGCATTGAAA
CTGGTGCTGCAGGAACAGGCGCTGGACGACAGGGTCCTGCCCAAGGGTGT
CTCGCCGGAGGAGGAGCTGAAGCTGCTGCGCCGACAGCTTCAGAGCACCC
TGTACAGCCCCAATCTAGAAGCCACTGCACAGAAGCTGCTGCAAGGAAAG
ACTGCGCCCTTGGAGATGTTCAAGTCGCTGCATGAGAAGCAGCAGCTGCT
GGACACCCTGATGGCACAAGGTGGTGGGCATGCCGTCATTACAGTGTTGC
TCTTCCTCAAGAGAACTCTGAATACCACGCAGTTTCATGGCATTCTGAGG
GAGAGACCCAAGGCCTTGGAGCAGTATCTGAGTTACCTGAAGGAAAGTGG
CGACCTGGCGGGCCATATTGAGCTACTGCAGCTATTTGGACGCCACCAGG
AGGCGGCTCTTAAGCAGTTTCAGGCAGCGCTCGCTTCCGGAGATACGAGC
ACCAGGAAGAAACACCTCCAGCTTTTGGTGGATGCCTATGCCACAGCGGG
AGTGGGTGTAATACCTCTCTACGAGCAGGTTTTTCACGCTGCCCTCAAGA
TGCAGCAGCTAATGGAGAAGGATAGCGCGCTCGGCAAGCTGCTTCGGGAT
CAACCCACTCCAGTGGAAGTGCTCTATGCTTGCTGCCAGGTGAACAGCAA
TTGGAAAGAGCAGGATATGCTCAAACCAGTGTCACCTCAGCGTTTTGCCG
CCGACCAGCAAATATCGCCGGCCCAGTACGAGTGGACGGCGCTCAATGAA
AGGGCGCAGGCACAGGCTTATGCGGATCTGGAGTGCATATTTGAGCGGGT
GCCCAGTTGGCATCCGCTGAAGACCAAACAGTTTCACATCAGCTTCGATC
TGACGCTGGCCGTGCTCCGGCTGTACGAGCTGCAGGCTCCCTCGACCGTC
CTTCAGCTATTCCTCTCCAAGATGGGCAACAGCGTTGAGAAACTGGCGCT
AGCCCAGCGGGTGAAGTGCATCAAGGCGGTCATAGATGCCATGGCCGGGT
TGAAGCAGCAGCAGGAGCTACAGCAGCTCAAGGACACCCTGCCCGAGCGA
TCCGAGGAGCAGTTCTACTGCGAGAATGCGCTGAAAAGCCTCCAGAGCAA
GCGATGGACTACGGACAACATCAAGCTCAAGTTGTAAAATTGACTTTCTT
TTACTTGTATAAACGTATTTTATTGTTAATCATTTATATGTGTATATAAT
TATATTACTACTACTCTGGTTTTATTAAATAATTGCAAATCACAAGCTGA
ATATCGAATAAAAAACAAAAATTTGTATCAAAAAAAAAAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

SD23896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16B-RA 1531 Vps16B-RA 2..1531 1..1530 7650 100 Plus
ca-RA 6751 ca-RA 6521..6751 1530..1300 1155 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25637475..25639004 1530..1 7335 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29814920..29816449 1530..1 7650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29555751..29557280 1530..1 7650 100 Minus
Blast to na_te.dros performed 2019-03-16 20:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6823..6990 1369..1539 117 56.9 Plus

SD23896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:28 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25637476..25639004 1..1529 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:10:33 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:37 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:43 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:09 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:55 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:58 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 2..1530 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:37 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 2..1530 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:43 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 3..1531 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:09 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 2..1530 1..1529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:55 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16B-RA 3..1531 1..1529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:28 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29814921..29816449 1..1529 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:28 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29814921..29816449 1..1529 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:28 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29814921..29816449 1..1529 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:43 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25640643..25642171 1..1529 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:58 Download gff for SD23896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29555752..29557280 1..1529 100   Minus

SD23896.pep Sequence

Translation from 43 to 1386

> SD23896.pep
MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN
NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ
STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT
VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR
HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA
LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR
FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS
FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM
AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKL*

SD23896.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16325-PA 446 GF16325-PA 1..446 1..447 2030 87.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11999-PA 447 GG11999-PA 1..447 1..447 2274 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20877-PA 472 GH20877-PA 4..472 1..447 1681 72.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16B-PA 447 CG18112-PA 1..447 1..447 2251 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10717-PA 468 GI10717-PA 1..468 1..447 1716 72.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24006-PA 454 GL24006-PA 1..454 1..447 1999 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14802-PA 454 GA14802-PA 1..454 1..447 2001 82.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12218-PA 447 GM12218-PA 1..447 1..447 2334 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17652-PA 447 GD17652-PA 1..447 1..447 2341 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23133-PA 468 GJ23133-PA 1..468 1..447 1661 74.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22537-PA 448 GK22537-PA 1..448 1..447 1746 74.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10425-PA 447 GE10425-PA 1..447 1..447 2291 96.9 Plus

SD23896.hyp Sequence

Translation from 43 to 1386

> SD23896.hyp
MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN
NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ
STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT
VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR
HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA
LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR
FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS
FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM
AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKL*

SD23896.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16B-PA 447 CG18112-PA 1..447 1..447 2251 100 Plus