![]() | BDGP Sequence Production Resources |
Search the DGRC for SD23896
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 238 |
Well: | 96 |
Vector: | pOT2 |
Associated Gene/Transcript | Vps16B-RA |
Protein status: | SD23896.pep: gold |
Preliminary Size: | 1347 |
Sequenced Size: | 1577 |
Gene | Date | Evidence |
---|---|---|
CG18112 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18112 | 2002-12-11 | Blastp of sequenced clone |
CG18112 | 2003-01-01 | Sim4 clustering to Release 3 |
Vps16B | 2008-04-29 | Release 5.5 accounting |
Vps16B | 2008-08-15 | Release 5.9 accounting |
Vps16B | 2008-12-18 | 5.12 accounting |
1577 bp (1577 high quality bases) assembled on 2002-12-11
GenBank Submission: BT003209
> SD23896.complete TCGTCACAAAATAGAACCTTACATTTAATAACGAATAATAACAATGGACC TGCAATTGGACAGCGAAAGCTATTGGAACCGATCCTCTCGCGCAGCGTTC AGCTTCGACGACGAAGACGAGGTGGACCTCGCCCCGGATCTGGTCAGCAA TGGCATCCTCGCCGACGACACCATTTCGGAGGCCAGCTTCAATAACAGTG TCGCCCTGAATCTCTCGATCAAATCCATTCTGAGCGAGGAGGCATTGAAA CTGGTGCTGCAGGAACAGGCGCTGGACGACAGGGTCCTGCCCAAGGGTGT CTCGCCGGAGGAGGAGCTGAAGCTGCTGCGCCGACAGCTTCAGAGCACCC TGTACAGCCCCAATCTAGAAGCCACTGCACAGAAGCTGCTGCAAGGAAAG ACTGCGCCCTTGGAGATGTTCAAGTCGCTGCATGAGAAGCAGCAGCTGCT GGACACCCTGATGGCACAAGGTGGTGGGCATGCCGTCATTACAGTGTTGC TCTTCCTCAAGAGAACTCTGAATACCACGCAGTTTCATGGCATTCTGAGG GAGAGACCCAAGGCCTTGGAGCAGTATCTGAGTTACCTGAAGGAAAGTGG CGACCTGGCGGGCCATATTGAGCTACTGCAGCTATTTGGACGCCACCAGG AGGCGGCTCTTAAGCAGTTTCAGGCAGCGCTCGCTTCCGGAGATACGAGC ACCAGGAAGAAACACCTCCAGCTTTTGGTGGATGCCTATGCCACAGCGGG AGTGGGTGTAATACCTCTCTACGAGCAGGTTTTTCACGCTGCCCTCAAGA TGCAGCAGCTAATGGAGAAGGATAGCGCGCTCGGCAAGCTGCTTCGGGAT CAACCCACTCCAGTGGAAGTGCTCTATGCTTGCTGCCAGGTGAACAGCAA TTGGAAAGAGCAGGATATGCTCAAACCAGTGTCACCTCAGCGTTTTGCCG CCGACCAGCAAATATCGCCGGCCCAGTACGAGTGGACGGCGCTCAATGAA AGGGCGCAGGCACAGGCTTATGCGGATCTGGAGTGCATATTTGAGCGGGT GCCCAGTTGGCATCCGCTGAAGACCAAACAGTTTCACATCAGCTTCGATC TGACGCTGGCCGTGCTCCGGCTGTACGAGCTGCAGGCTCCCTCGACCGTC CTTCAGCTATTCCTCTCCAAGATGGGCAACAGCGTTGAGAAACTGGCGCT AGCCCAGCGGGTGAAGTGCATCAAGGCGGTCATAGATGCCATGGCCGGGT TGAAGCAGCAGCAGGAGCTACAGCAGCTCAAGGACACCCTGCCCGAGCGA TCCGAGGAGCAGTTCTACTGCGAGAATGCGCTGAAAAGCCTCCAGAGCAA GCGATGGACTACGGACAACATCAAGCTCAAGTTGTAAAATTGACTTTCTT TTACTTGTATAAACGTATTTTATTGTTAATCATTTATATGTGTATATAAT TATATTACTACTACTCTGGTTTTATTAAATAATTGCAAATCACAAGCTGA ATATCGAATAAAAAACAAAAATTTGTATCAAAAAAAAAAGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25637475..25639004 | 1530..1 | 7335 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29814920..29816449 | 1530..1 | 7650 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29555751..29557280 | 1530..1 | 7650 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 6823..6990 | 1369..1539 | 117 | 56.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25637476..25639004 | 1..1529 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 1..1344 | 44..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 1..1344 | 44..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 1..1344 | 44..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 1..1344 | 44..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 1..1344 | 44..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 2..1530 | 1..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 2..1530 | 1..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 3..1531 | 1..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 2..1530 | 1..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16B-RA | 3..1531 | 1..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29814921..29816449 | 1..1529 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29814921..29816449 | 1..1529 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29814921..29816449 | 1..1529 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25640643..25642171 | 1..1529 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29555752..29557280 | 1..1529 | 100 | Minus |
Translation from 43 to 1386
> SD23896.pep MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16325-PA | 446 | GF16325-PA | 1..446 | 1..447 | 2030 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11999-PA | 447 | GG11999-PA | 1..447 | 1..447 | 2274 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20877-PA | 472 | GH20877-PA | 4..472 | 1..447 | 1681 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps16B-PA | 447 | CG18112-PA | 1..447 | 1..447 | 2251 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10717-PA | 468 | GI10717-PA | 1..468 | 1..447 | 1716 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24006-PA | 454 | GL24006-PA | 1..454 | 1..447 | 1999 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14802-PA | 454 | GA14802-PA | 1..454 | 1..447 | 2001 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12218-PA | 447 | GM12218-PA | 1..447 | 1..447 | 2334 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17652-PA | 447 | GD17652-PA | 1..447 | 1..447 | 2341 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23133-PA | 468 | GJ23133-PA | 1..468 | 1..447 | 1661 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22537-PA | 448 | GK22537-PA | 1..448 | 1..447 | 1746 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10425-PA | 447 | GE10425-PA | 1..447 | 1..447 | 2291 | 96.9 | Plus |
Translation from 43 to 1386
> SD23896.hyp MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps16B-PA | 447 | CG18112-PA | 1..447 | 1..447 | 2251 | 100 | Plus |