BDGP Sequence Production Resources |
Search the DGRC for SD24339
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 243 |
Well: | 39 |
Vector: | pOT2 |
Associated Gene/Transcript | Arpc3B-RA |
Protein status: | SD24339.pep: gold |
Preliminary Size: | 525 |
Sequenced Size: | 697 |
Gene | Date | Evidence |
---|---|---|
CG8936 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8936 | 2002-05-18 | Blastp of sequenced clone |
CG8936 | 2003-01-01 | Sim4 clustering to Release 3 |
Arpc3B | 2008-04-29 | Release 5.5 accounting |
Arpc3B | 2008-08-15 | Release 5.9 accounting |
Arpc3B | 2008-12-18 | 5.12 accounting |
697 bp (697 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119268
> SD24339.complete GAAGTTCTGATATATCATATATTACTATATTTTTCGTTTATTTTTAACTT TTGAAAAACAAGACAGAAGTAATTGAAATGCCGGCATTTCACTCGGAAAT AGAGGATTTCCAAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTA CCCAAGTCCGAGGACCAGCGCCCACTGTTGATATTCCCAACGACATCATC GATGAGTCACTCTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGA AGTTAAGTCGGAGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCA CGGAATGTTTGAAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAG CAGGAGCTCTATACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGC GGGATTTCCGCTGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGA TGCGTCAGTACTTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTG GAAAAGGTCTTCGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATG CTTTGCCAAGAAGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGT AAAAGACTCACTAATATACGGCCGATCTTAGAGTATTTACCACCAAAATT TACGAATAAACTGCTTTGAATGTAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arpc3B-RA | 733 | Arpc3B-RA | 42..715 | 1..674 | 3325 | 99.5 | Plus |
Arpc3B-RB | 838 | Arpc3B-RB | 229..820 | 83..674 | 2930 | 99.6 | Plus |
nc_24328.a | 481 | nc_24328.a | 63..479 | 258..674 | 2055 | 99.5 | Plus |
Arpc3B-RB | 838 | Arpc3B-RB | 34..117 | 1..84 | 405 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16994101..16994518 | 673..256 | 2090 | 100 | Minus |
chrX | 22417052 | chrX | 16995015..16995189 | 257..83 | 875 | 100 | Minus |
chrX | 22417052 | chrX | 16995300..16995383 | 84..1 | 420 | 100 | Minus |
chr3R | 27901430 | chr3R | 11659993..11660153 | 436..596 | 325 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 17104570..17104988 | 674..256 | 2065 | 99.5 | Minus |
X | 23542271 | X | 17105483..17105657 | 257..83 | 875 | 100 | Minus |
X | 23542271 | X | 17105769..17105852 | 84..1 | 405 | 98.8 | Minus |
3R | 32079331 | 3R | 15835384..15835544 | 436..596 | 325 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 17112668..17113086 | 674..256 | 2065 | 99.5 | Minus |
X | 23527363 | X | 17113581..17113755 | 257..83 | 875 | 100 | Minus |
X | 23527363 | X | 17113867..17113950 | 84..1 | 405 | 98.8 | Minus |
3R | 31820162 | 3R | 15576215..15576375 | 436..596 | 325 | 80.1 | Plus |
3R | 31820162 | 3R | 15575779..15575911 | 119..251 | 155 | 74.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16994101..16994516 | 258..673 | 100 | <- | Minus |
chrX | 16995015..16995188 | 84..257 | 100 | <- | Minus |
chrX | 16995301..16995383 | 1..83 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..525 | 78..602 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..525 | 78..602 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..525 | 78..602 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..525 | 78..602 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..525 | 78..602 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..671 | 1..671 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..673 | 1..673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..673 | 1..673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..671 | 1..671 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc3B-RA | 1..673 | 1..673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17104571..17104986 | 258..673 | 99 | <- | Minus |
X | 17105483..17105656 | 84..257 | 100 | <- | Minus |
X | 17105770..17105852 | 1..83 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17104571..17104986 | 258..673 | 99 | <- | Minus |
X | 17105483..17105656 | 84..257 | 100 | <- | Minus |
X | 17105770..17105852 | 1..83 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17104571..17104986 | 258..673 | 99 | <- | Minus |
X | 17105483..17105656 | 84..257 | 100 | <- | Minus |
X | 17105770..17105852 | 1..83 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16998604..16999019 | 258..673 | 99 | <- | Minus |
arm_X | 16999516..16999689 | 84..257 | 100 | <- | Minus |
arm_X | 16999803..16999885 | 1..83 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17113868..17113950 | 1..83 | 98 | Minus | |
X | 17112669..17113084 | 258..673 | 99 | <- | Minus |
X | 17113581..17113754 | 84..257 | 100 | <- | Minus |
Translation from 77 to 601
> SD24339.hyp MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG KPSKWWICFAKKKFMEKSLSGPGM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arpc3B-PA | 174 | CG8936-PA | 1..174 | 1..174 | 922 | 100 | Plus |
Arpc3B-PC | 157 | CG8936-PC | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3B-PB | 157 | CG8936-PB | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3A-PE | 177 | CG4560-PE | 1..176 | 1..173 | 721 | 73.9 | Plus |
Arpc3A-PC | 177 | CG4560-PC | 1..176 | 1..173 | 721 | 73.9 | Plus |
Translation from 77 to 601
> SD24339.pep MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG KPSKWWICFAKKKFMEKSLSGPGM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18546-PA | 177 | GF18546-PA | 1..176 | 1..173 | 766 | 76.1 | Plus |
Dana\GF21827-PA | 157 | GF21827-PA | 1..156 | 18..173 | 749 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18204-PA | 172 | GG18204-PA | 1..172 | 1..172 | 781 | 84.3 | Plus |
Dere\GG16957-PA | 177 | GG16957-PA | 1..176 | 1..173 | 748 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24637-PA | 174 | GH24637-PA | 1..173 | 1..173 | 785 | 80.3 | Plus |
Dgri\GH19295-PA | 177 | GH19295-PA | 1..176 | 1..173 | 763 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arpc3B-PA | 174 | CG8936-PA | 1..174 | 1..174 | 922 | 100 | Plus |
Arpc3B-PC | 157 | CG8936-PC | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3B-PB | 157 | CG8936-PB | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3A-PE | 177 | CG4560-PE | 1..176 | 1..173 | 721 | 73.9 | Plus |
Arpc3A-PC | 177 | CG4560-PC | 1..176 | 1..173 | 721 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23512-PA | 177 | GI23512-PA | 1..176 | 1..173 | 773 | 77.3 | Plus |
Dmoj\GI15826-PA | 173 | GI15826-PA | 1..173 | 1..173 | 767 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22074-PA | 177 | GL22074-PA | 1..176 | 1..173 | 765 | 76.1 | Plus |
Dper\GL18294-PA | 157 | GL18294-PA | 1..157 | 18..174 | 693 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27369-PA | 177 | GA27369-PA | 1..176 | 1..173 | 765 | 76.1 | Plus |
Dpse\GA27398-PA | 157 | GA27398-PA | 1..157 | 18..174 | 693 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24264-PA | 177 | GM24264-PA | 1..176 | 1..173 | 745 | 73.9 | Plus |
Dsec\GM13341-PA | 137 | GM13341-PA | 1..136 | 1..136 | 709 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15703-PA | 174 | GD15703-PA | 1..174 | 1..174 | 924 | 99.4 | Plus |
Dsim\GD19052-PA | 177 | GD19052-PA | 1..176 | 1..173 | 745 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18679-PA | 174 | GJ18679-PA | 1..173 | 1..173 | 779 | 79.2 | Plus |
Dvir\GJ10263-PA | 177 | GJ10263-PA | 1..176 | 1..173 | 772 | 77.3 | Plus |