Clone SD24341 Report

Search the DGRC for SD24341

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:243
Well:41
Vector:pOT2
Associated Gene/TranscriptCG1354-RB
Protein status:SD24341.pep: gold
Sequenced Size:1298

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1354-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

SD24341.complete Sequence

1298 bp assembled on 2009-09-30

GenBank Submission: BT099912.1

> SD24341.complete
CTCGTGCCGAATTCGGCACGAGCTTTTCATCTGCTCCTGCTGATGCTGCC
GCCGATGGCTTTTGCCTTACCCACACGTCGTGTTCCGGTGCCCGATGAGC
GTTTCGATTACCTGGTGGAGTACCACAAGCCGGCCAGTGTGGTTCCTGCC
TATTTGAACGTCGTGGACATTGCTGGCTTGGTGAAGGGAGCCGCCGAGGG
TCAGGGACTTGGAAACGACTTCCTTTCGCACATCAGCGCCTGCGATGCCA
TTTTCCACTTGTGCCGCGCCTTCGAGGATCCGGATGTGACCCACGTGGAG
GGCGAGGTGGATCCGGTGCGCGATCTGGAGATCATCTCCGAGGAGCTGCG
CCTCAAGGACGAGGAGAATCTGCTCAAGAACTTGGACAAACTGGAGAAGG
TGGTGGCCCGCGGCGGCGACAAGAAGCTCAAGCCCGAATACGATTCGATG
CTTAAGATTAAGGATATCCTTATCGATCAGAAGCGTCATCTGCGCTTCGA
GGACTGGAATGCCCATGATATTGAGGCCTTGAACAAGTATCTGTTCCTGA
CCTCCAAACCGGTCATCTACCTGGTGAACCTTTCGGACAAGGACTTCATC
CGCAAGAAGAACAAGTGGCTGCCGAAGATCAAGGAATGGATCGACAAGAA
CGATCCCGGAGCACTGCTCATTCCCTTCTCCGGCGCCTTCGAGCACCAGC
TGACCGAAAAGGACGAACTGGAGCGCAAGGCCTACGAGACGGAGACCAAG
TGCAAAAGTATGCTGGAGAAGATCGTTGTGACCGGCTACAAGGGCCTGCA
GCTGGAGTACTTCTTCACCGCCGGGCCGGATGAAGTGAAGGCATGGACCA
TCCAGAAGGGCACCAAGGCTCCCCAAGCCGCCGGACGCATTCACACCGAC
TTCGAGAAGGGCTTCATTATGGCCGAGGTGATGCACTTCGAGGACTTCAA
GGCGGAGGGCAGTGAGGCGAATGCCAAGGCCGCTGGCAAATATCGCCAAC
AGGGACGCAACTACACCGTCGAGGATGGCGACATCATATTCTTTAAGTTC
AACGCCGGCGCTGGCCTCAAGGATGCCAAGAAGAAATGATACCGTTTGGC
CATGATCATCGCCATGTCCACCGTTTTGTACATTAACTTGATCTTGTACT
CCCAGATGTTTCGCTTCGCCAGAGGCTAGCTCCTCATTATCACATCCCTC
ACTCTCATGTTCGAGGCCTGAAAATGCATTTTGAATTTCCTTTTTTTTTT
GTACGCTATGTAAACACGCTTATGACACACAAAAAAAAAAAAAAAAAA

SD24341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RB 1504 CG1354-RB 64..1322 23..1282 6170 99.4 Plus
CG1354-RD 1887 CG1354-RD 401..1605 77..1282 5900 99.4 Plus
CG1354-RA 1877 CG1354-RA 391..1595 77..1282 5900 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9672919..9673678 520..1280 3755 99.9 Plus
chrX 22417052 chrX 9672269..9672652 136..519 1920 100 Plus
chrX 22417052 chrX 9671948..9672062 23..137 575 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9781159..9781920 520..1282 3705 99.3 Plus
X 23542271 X 9780509..9780892 136..519 1890 99.5 Plus
X 23542271 X 9780187..9780301 23..137 575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9789257..9790018 520..1282 3715 99.3 Plus
X 23527363 X 9788607..9788990 136..519 1890 99.4 Plus
X 23527363 X 9788285..9788399 23..137 575 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:39:58 has no hits.

SD24341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:41:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9671948..9672062 23..137 100 -> Plus
chrX 9672271..9672652 138..519 100 -> Plus
chrX 9672919..9673678 520..1280 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:56:21 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1047 43..1089 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:36:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1047 43..1089 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:20:26 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1047 43..1089 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:15 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1047 43..1089 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-30 10:16:51 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1257 23..1280 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:36:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1257 23..1280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:20:26 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1257 23..1280 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:15 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 1..1257 23..1280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
X 9780187..9780301 23..137 100 -> Plus
X 9780511..9780892 138..519 99 -> Plus
X 9781159..9781918 520..1280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
X 9780187..9780301 23..137 100 -> Plus
X 9780511..9780892 138..519 99 -> Plus
X 9781159..9781918 520..1280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:01 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
X 9780187..9780301 23..137 100 -> Plus
X 9780511..9780892 138..519 99 -> Plus
X 9781159..9781918 520..1280 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:20:26 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9674220..9674334 23..137 100 -> Plus
arm_X 9674544..9674925 138..519 99 -> Plus
arm_X 9675192..9675951 520..1280 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:19:25 Download gff for SD24341.complete
Subject Subject Range Query Range Percent Splice Strand
X 9788609..9788990 138..519 99 -> Plus
X 9789257..9790016 520..1280 99   Plus
X 9788285..9788399 23..137 100 -> Plus

SD24341.pep Sequence

Translation from 0 to 1088

> SD24341.pep
LVPNSARAFHLLLLMLPPMAFALPTRRVPVPDERFDYLVEYHKPASVVPA
YLNVVDIAGLVKGAAEGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVE
GEVDPVRDLEIISEELRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSM
LKIKDILIDQKRHLRFEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFI
RKKNKWLPKIKEWIDKNDPGALLIPFSGAFEHQLTEKDELERKAYETETK
CKSMLEKIVVTGYKGLQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTD
FEKGFIMAEVMHFEDFKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKF
NAGAGLKDAKKK*

SD24341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25119-PA 397 GF25119-PA 29..397 2..362 1671 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18324-PA 397 GG18324-PA 29..397 2..362 1767 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11803-PA 397 GH11803-PA 29..397 2..362 1676 86.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PB 348 CG1354-PB 1..348 15..362 1824 100 Plus
CG1354-PE 397 CG1354-PE 62..397 27..362 1761 100 Plus
CG1354-PA 397 CG1354-PA 62..397 27..362 1761 100 Plus
CG1354-PD 397 CG1354-PD 62..397 27..362 1761 100 Plus
CG1354-PC 397 CG1354-PC 62..397 27..362 1761 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15984-PA 397 GI15984-PA 29..397 2..362 1690 87.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16374-PA 397 GL16374-PA 62..397 27..362 1684 94 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12352-PA 397 GA12352-PA 62..397 27..362 1706 95.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11387-PA 397 GM11387-PA 29..397 2..362 1768 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24779-PA 383 GD24779-PA 62..378 27..343 1674 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18714-PA 397 GJ18714-PA 29..397 2..362 1677 87.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25358-PA 397 GK25358-PA 29..397 2..362 1692 87.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17809-PA 432 GE17809-PA 74..432 8..362 1823 96.9 Plus

SD24341.hyp Sequence

Translation from 24 to 1088

> SD24341.hyp
FHLLLLMLPPMAFALPTRRVPVPDERFDYLVEYHKPASVVPAYLNVVDIA
GLVKGAAEGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRD
LEIISEELRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILI
DQKRHLRFEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLP
KIKEWIDKNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKI
VVTGYKGLQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMA
EVMHFEDFKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKD
AKKK*

SD24341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PB 348 CG1354-PB 1..348 7..354 1824 100 Plus
CG1354-PE 397 CG1354-PE 62..397 19..354 1761 100 Plus
CG1354-PA 397 CG1354-PA 62..397 19..354 1761 100 Plus
CG1354-PD 397 CG1354-PD 62..397 19..354 1761 100 Plus
CG1354-PC 397 CG1354-PC 62..397 19..354 1761 100 Plus