Clone SD26182 Report

Search the DGRC for SD26182

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:261
Well:82
Vector:pOT2
Associated Gene/TranscriptCycH-RA
Protein status:SD26182.pep: validated not full length
Preliminary Size:1161
Sequenced Size:1068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7405 2002-01-01 Sim4 clustering to Release 2
CG7405 2003-01-01 Sim4 clustering to Release 3
CycH 2008-04-29 Release 5.5 accounting
CycH 2008-08-15 Release 5.9 accounting
CycH 2008-12-18 5.12 accounting

Clone Sequence Records

SD26182.complete Sequence

1068 bp (1068 high quality bases) assembled on 2005-10-26

GenBank Submission: BT023917

> SD26182.complete
TATCCTGTGAGCTCGCAAAAGAGGTCCTGGACATTCGCCAATGAGGGCCA
GCTCATGGAGTTCCGCGTGGAGCAGAACAGCAAGTATATCGAGTCGCACG
AGGAGGAGGCGCAGGGTCGCGACCTCAATGAGCACTTTCTCACGTCGGCG
GAGGAGCGCCTGTTGCTGAAGCAGTACGAGATCTACCTGTTCGATTTCTG
CCGCCGCTTCGAACCGACGATGCCCAAGTGCGTTGTGGGCACGGCCTTCC
ACTACTTCAAGCGGTTCTATCTGAACAACTCCCCCATGGACTATCACCCC
AAGGAGATTCTAGCCACATGCGTGTTCGTTGCCTGCAAAGTTGAGGAGTT
CAACGTGTCCATCAACCAGTTCGTGAACAACATCAAGGGCGACAGGAACA
AGGCCACCGACATAGTGTTGTCCAATGAATTACTGCTGATTGGACAGCTC
AACTACTACCTCACCATACACAATCCGTTCAGACCCATCGAGGGTTTCCT
GATAGATATAAAAACTCGCAGCAATATGCAGAATCCAGATCGTCTGCGGC
CACATATTGATAGTTTCATTGATTCCACGTACTACTCGGATGCCTGTCTT
CTGCATACGCCTTCGCAAATTGCATTGGCTGCCGTCCTCCACGCGGCCAG
CAGAGAGCAAGAGAATCTCGATAGCTATGTGACGGATCTTCTGTTTGTCT
CCGCCAGGGAGAAGCTACCCGGACTCATAGATGCCGTGCGAAAAATTCGC
ATAATGGTGAAGCAATATCAGCAGCCCGATCGGGAGAAGGTCAAGGCCAT
CGAGAAAAAGTTGGACAAGTGCCGAAATCAAGCCAATAATCCTGATAGCG
AACTCTATAAGGAGCGCCTACGCCGATTGTACACCGATGAGGATGACATG
CCCGCCGAAGATGCCTCATTCCACATTGCAGATGTGAGCTCGGACACATC
TGCTATGAACATCAGCCAATAGACTTAAGAATATTTATTTAAATGATGTG
ATGATCTACTACTGCGTGGATTTCATCGATATTAAAGCATTTTGTAATTT
AAAAAAAAAAAAAAAAAA

SD26182.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-RA 1238 CycH-RA 86..1136 1..1051 5225 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21810944..21811254 1..311 1540 99.7 Plus
chr3L 24539361 chr3L 21811592..21811820 514..742 1145 100 Plus
chr3L 24539361 chr3L 21811331..21811532 312..513 995 99.5 Plus
chr3L 24539361 chr3L 21812046..21812241 855..1050 980 100 Plus
chr3L 24539361 chr3L 21811876..21811987 743..854 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21822009..21822319 1..311 1540 99.7 Plus
3L 28110227 3L 21822657..21822885 514..742 1145 100 Plus
3L 28110227 3L 21822396..21822597 312..513 995 99.5 Plus
3L 28110227 3L 21823111..21823307 855..1051 985 100 Plus
3L 28110227 3L 21822941..21823052 743..854 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21815109..21815419 1..311 1540 99.6 Plus
3L 28103327 3L 21815757..21815985 514..742 1145 100 Plus
3L 28103327 3L 21815496..21815697 312..513 995 99.5 Plus
3L 28103327 3L 21816211..21816407 855..1051 985 100 Plus
3L 28103327 3L 21816041..21816152 743..854 560 100 Plus
Blast to na_te.dros performed 2019-03-15 14:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 3021..3093 742..813 110 63 Plus

SD26182.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:44:58 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21811876..21811987 743..854 100 -> Plus
chr3L 21812046..21812241 855..1050 100   Plus
chr3L 21810944..21811254 1..311 99 -> Plus
chr3L 21811331..21811532 312..513 99 -> Plus
chr3L 21811592..21811820 514..742 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:10:59 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 4..975 1..972 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:45:06 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 4..975 1..972 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:39:53 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 4..975 1..972 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:26:01 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 4..975 1..972 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:06:55 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 4..975 1..972 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:53:33 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 9..1058 1..1050 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:45:06 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 9..1058 1..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:39:53 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 13..1062 1..1050 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:26:01 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 9..1058 1..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:06:55 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 13..1062 1..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:44:58 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21822657..21822885 514..742 100 -> Plus
3L 21822941..21823052 743..854 100 -> Plus
3L 21823111..21823306 855..1050 100   Plus
3L 21822009..21822319 1..311 99 -> Plus
3L 21822396..21822597 312..513 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:44:58 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21822657..21822885 514..742 100 -> Plus
3L 21822941..21823052 743..854 100 -> Plus
3L 21823111..21823306 855..1050 100   Plus
3L 21822009..21822319 1..311 99 -> Plus
3L 21822396..21822597 312..513 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:44:58 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21822657..21822885 514..742 100 -> Plus
3L 21822941..21823052 743..854 100 -> Plus
3L 21823111..21823306 855..1050 100   Plus
3L 21822009..21822319 1..311 99 -> Plus
3L 21822396..21822597 312..513 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:39:53 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21815109..21815419 1..311 99 -> Plus
arm_3L 21815496..21815697 312..513 99 -> Plus
arm_3L 21815757..21815985 514..742 100 -> Plus
arm_3L 21816041..21816152 743..854 100 -> Plus
arm_3L 21816211..21816406 855..1050 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:58:59 Download gff for SD26182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21816041..21816152 743..854 100 -> Plus
3L 21816211..21816406 855..1050 100   Plus
3L 21815757..21815985 514..742 100 -> Plus
3L 21815109..21815419 1..311 99 -> Plus
3L 21815496..21815697 312..513 99 -> Plus

SD26182.pep Sequence

Translation from 0 to 971

> SD26182.pep
YPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGRDLNEHFLTSA
EERLLLKQYEIYLFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHP
KEILATCVFVACKVEEFNVSINQFVNNIKGDRNKATDIVLSNELLLIGQL
NYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPHIDSFIDSTYYSDACL
LHTPSQIALAAVLHAASREQENLDSYVTDLLFVSAREKLPGLIDAVRKIR
IMVKQYQQPDREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDEDDM
PAEDASFHIADVSSDTSAMNISQ*

SD26182.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25171-PA 324 GF25171-PA 2..324 1..323 1645 93.8 Plus
Dana\GF18125-PA 267 GF18125-PA 61..202 78..212 167 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16226-PA 324 GG16226-PA 2..324 1..323 1679 96.3 Plus
Dere\GG21023-PA 267 GG21023-PA 61..202 78..212 167 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16374-PA 325 GH16374-PA 2..325 1..323 1533 87.7 Plus
Dgri\GH19239-PA 267 GH19239-PA 61..202 78..212 164 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-PA 324 CG7405-PA 2..324 1..323 1685 100 Plus
CycC-PA 267 CG7281-PA 61..260 78..273 161 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11567-PA 325 GI11567-PA 2..325 1..323 1560 89.2 Plus
Dmoj\GI24273-PA 267 GI24273-PA 61..202 78..212 166 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24864-PA 311 GL24864-PA 2..308 1..307 1472 88.6 Plus
Dper\GL23664-PA 267 GL23664-PA 61..202 78..212 167 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20328-PA 324 GA20328-PA 2..324 1..323 1602 91.3 Plus
Dpse\GA20234-PA 267 GA20234-PA 61..202 78..212 167 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22410-PA 324 GM22410-PA 2..324 1..323 1712 98.5 Plus
Dsec\GM25819-PA 267 GM25819-PA 61..202 78..212 167 30.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15002-PA 324 GD15002-PA 2..324 1..323 1725 99.4 Plus
Dsim\GD20395-PA 267 GD20395-PA 61..202 78..212 165 30.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11246-PA 325 GJ11246-PA 2..325 1..323 1571 90.1 Plus
Dvir\GJ10846-PA 267 GJ10846-PA 61..212 78..222 165 29.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16840-PA 326 GK16840-PA 2..326 1..323 1530 86.5 Plus
Dwil\GK13831-PA 267 GK13831-PA 61..202 78..212 169 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19794-PA 324 GE19794-PA 2..324 1..323 1679 96 Plus
Dyak\GE23026-PA 324 GE23026-PA 2..324 1..323 1679 96 Plus
Dyak\GE26424-PA 267 GE26424-PA 61..202 78..212 167 30.4 Plus

SD26182.hyp Sequence

Translation from 0 to 971

> SD26182.hyp
YPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGRDLNEHFLTSA
EERLLLKQYEIYLFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHP
KEILATCVFVACKVEEFNVSINQFVNNIKGDRNKATDIVLSNELLLIGQL
NYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPHIDSFIDSTYYSDACL
LHTPSQIALAAVLHAASREQENLDSYVTDLLFVSAREKLPGLIDAVRKIR
IMVKQYQQPDREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDEDDM
PAEDASFHIADVSSDTSAMNISQ*

SD26182.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-PA 324 CG7405-PA 2..324 1..323 1685 100 Plus
CycC-PA 267 CG7281-PA 61..260 78..273 161 26.2 Plus