Clone SD27025 Report

Search the DGRC for SD27025

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:270
Well:25
Vector:pOT2
Associated Gene/Transcriptcv-RA
Protein status:SD27025.pep: gold
Preliminary Size:780
Sequenced Size:1923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12410 2002-01-01 Sim4 clustering to Release 2
CG12410 2002-06-12 Blastp of sequenced clone
CG12410 2003-01-01 Sim4 clustering to Release 3
cv 2008-04-29 Release 5.5 accounting
cv 2008-08-15 Release 5.9 accounting
cv 2008-12-18 5.12 accounting

Clone Sequence Records

SD27025.complete Sequence

1923 bp (1923 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122270

> SD27025.complete
ATGTATCGAGCCGAATCGTGTTGTTGCTTTGCCTAGTTGATCATTCAGTT
GGCGTACGCGTGCGCTGTGATCCGCCGATCTGATCTAAACCGATCCTCCA
GATTCAGACGAAGTTATTTGATTCGGATACCGGAATTGTCAACAAAAGGC
AGCGGCGCCGGCGTGTGGGTAAGAAGCAGAAAAGACAGTTTGTGCCCTAG
CAATAACAAAAACAAGGCGAGAGAGAGACATTGTCGCCGCGCAGTCGCTC
CTCTGCCGCCGTCAACGTCAGTGCCGCAGCGCACAGTTCGATCCGCTCGC
TAGTTGTTGCTGTTTAGTGTTCGTTGTGGTGTCGCTTGTTGTTGTTTTGA
TCCGTCCGGAATCGCATAGCGATAATTCATATATATATAAATATATATAT
ATATATATAAATTAATAGTGGTGCAAGAAGGCGAGCAAATCGAGTCAAGT
CAAGTCAAATCAAATGCCCAATCTGCGTGTGCTTGTGTGCCTGTAATTGT
TGTTTTGTTGTAATTGCACCCGCGCACACACTCAAACACTTAACTGCGGG
AAAGAGCGCATTCCAATCCCTACACACACACGCGCACACGCACACACAGC
CACCGCCGATCATGGAAATTTGGCGCTCGCTCACAGTGGGCACCATCGTG
CTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAACGAGGT
CGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTGCAAGT
GCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCCTGGGC
AAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAGCCCAA
CGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTTCGATG
GAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCGACAGC
TTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGACAAGTA
CTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAGAACCA
ATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTGTGACC
GTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAACAAGTG
CCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTTCCACG
ACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCGTAAAC
GAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGCGACGA
GCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAGCATGG
GTCCGTTCGATGGACCCGTGAACAACAACTACTGAGCGCGGTGCGATCAG
GATGCCATTCAAGGATTCAAGAAACAGAACAAAACAGAAGCCCACATCTA
ACAAATTTAGCTACTCAATTCAGTGACATTATTATTATTATTATGTAGTA
CGAAGTAATATTTGTATAGCACTATTATTATTATTTTTATTTACAACAAA
TGATTAGGCGCTTTGAATTGTTTTACTTATGAACCGGCCAAGATATATAT
ATATATATATATTATATTACACATTTTTTTTTTGGACTAAAAAATTTATT
TTTTGTCAATGTTTTTGAGAGTTTTGATATTCTGGGGCGGGGTAAAGTGC
AATTACTTAGTTGACCACACTTTGCTAACTTCTTCTTGTAAATAAAAATT
TCATATGTAAACAGTAATCGTTGTCTTTTAATGCATGTCTTAAGGTTAAA
TAAGCAATCAAGGCTCTACAAACACTCAATAAGTACATAACTTAATTTTG
GAATTAATTTACAAATGTCAACTATGTATAAATATGCCATTATTACTCAA
AAAAAAAAAAAAAAAAAAAAAAA

SD27025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RA 1917 cv-RA 19..1917 1..1898 9405 99.8 Plus
CG3149-RA 2348 CG3149-RA 2129..2348 1901..1682 1100 100 Minus
tsg-RA 751 tsg-RA 77..187 690..800 210 79.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5584783..5585492 1188..1898 3505 99.9 Plus
chrX 22417052 chrX 5582721..5583391 163..831 3290 99.7 Plus
chrX 22417052 chrX 5584299..5584513 831..1045 1075 100 Plus
chrX 22417052 chrX 5582399..5582562 1..164 820 100 Plus
chrX 22417052 chrX 5584573..5584717 1045..1189 710 99.3 Plus
chrX 22417052 chrX 11879814..11879924 800..690 210 79.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5692375..5693087 1188..1901 3520 99.9 Plus
X 23542271 X 5690318..5690988 163..831 3290 99.7 Plus
X 23542271 X 5691891..5692105 831..1045 1075 100 Plus
X 23542271 X 5689996..5690159 1..164 820 100 Plus
X 23542271 X 5692165..5692309 1045..1189 725 100 Plus
X 23542271 X 11988727..11988837 800..690 210 79.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5700473..5701185 1188..1901 3530 99.8 Plus
X 23527363 X 5698416..5699086 163..831 3300 99.7 Plus
X 23527363 X 5699989..5700203 831..1045 1075 100 Plus
X 23527363 X 5698094..5698257 1..164 820 100 Plus
X 23527363 X 5700263..5700407 1045..1189 725 100 Plus
X 23527363 X 11996825..11996935 800..690 210 79.2 Minus
Blast to na_te.dros performed 2019-03-15 20:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1500..1661 1682..1514 151 59.4 Minus

SD27025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:47:13 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5582399..5582560 1..162 100 -> Plus
chrX 5582721..5583391 163..831 86 -> Plus
chrX 5584300..5584512 832..1044 100 -> Plus
chrX 5584573..5584717 1045..1189 99 -> Plus
chrX 5584785..5585072 1190..1477 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:05 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 612..1385 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:44 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 612..1385 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:20:21 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 612..1385 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:29 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 612..1385 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:04 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 612..1385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:49:32 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:44 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:21 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..1893 7..1898 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:29 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:04 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..1893 7..1898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:13 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
X 5689996..5690157 1..162 100 -> Plus
X 5690318..5690988 163..831 99 -> Plus
X 5691892..5692104 832..1044 100 -> Plus
X 5692165..5692309 1045..1189 100 -> Plus
X 5692377..5693084 1190..1898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:13 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
X 5689996..5690157 1..162 100 -> Plus
X 5690318..5690988 163..831 99 -> Plus
X 5691892..5692104 832..1044 100 -> Plus
X 5692165..5692309 1045..1189 100 -> Plus
X 5692377..5693084 1190..1898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:13 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
X 5689996..5690157 1..162 100 -> Plus
X 5690318..5690988 163..831 99 -> Plus
X 5691892..5692104 832..1044 100 -> Plus
X 5692165..5692309 1045..1189 100 -> Plus
X 5692377..5693084 1190..1898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:21 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584029..5584190 1..162 100 -> Plus
arm_X 5584351..5585021 163..831 99 -> Plus
arm_X 5585925..5586137 832..1044 100 -> Plus
arm_X 5586198..5586342 1045..1189 100 -> Plus
arm_X 5586410..5587117 1190..1898 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:17 Download gff for SD27025.complete
Subject Subject Range Query Range Percent Splice Strand
X 5698416..5699086 163..831 99 -> Plus
X 5699990..5700202 832..1044 100 -> Plus
X 5700263..5700407 1045..1189 100 -> Plus
X 5700475..5701182 1190..1898 99   Plus
X 5698094..5698255 1..162 100 -> Plus

SD27025.pep Sequence

Translation from 611 to 1384

> SD27025.pep
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNY*

SD27025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21369-PA 256 GF21369-PA 1..256 1..257 1160 87.5 Plus
Dana\GF22285-PA 296 GF22285-PA 46..252 5..238 468 42.3 Plus
Dana\GF20091-PA 119 GF20091-PA 1..119 86..233 319 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18776-PA 257 GG18776-PA 1..257 1..257 1357 100 Plus
Dere\GG18813-PA 251 GG18813-PA 7..232 8..242 469 40.9 Plus
Dere\GG14197-PA 116 GG14197-PA 4..108 86..222 317 48.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12675-PA 253 GH12675-PA 1..253 1..257 986 77.5 Plus
Dgri\GH11824-PA 243 GH11824-PA 21..203 25..224 483 47 Plus
Dgri\GH15535-PA 150 GH15535-PA 29..143 86..222 336 47.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
cv-PC 257 CG12410-PC 1..257 1..257 1446 100 Plus
cv-PB 257 CG12410-PB 1..257 1..257 1446 100 Plus
cv-PA 257 CG12410-PA 1..257 1..257 1446 100 Plus
tsg-PA 249 CG1502-PA 24..230 25..242 540 43.2 Plus
srw-PB 136 CG11582-PB 24..128 86..222 342 48.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16252-PA 251 GI16252-PA 1..251 1..257 953 75.2 Plus
Dmoj\GI14766-PA 241 GI14766-PA 4..218 13..240 482 41 Plus
Dmoj\GI16812-PA 121 GI16812-PA 4..121 86..232 339 51 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18239-PA 258 GL18239-PA 1..258 1..257 1199 88 Plus
Dper\GL17975-PA 100 GL17975-PA 3..99 106..230 291 49.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11617-PA 258 GA11617-PA 1..258 1..257 1201 88.4 Plus
Dpse\GA13438-PA 248 GA13438-PA 25..222 25..240 482 44.7 Plus
Dpse\GA11080-PA 100 GA11080-PA 3..99 106..230 287 48.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12427-PA 254 GM12427-PA 1..254 1..257 1327 98.8 Plus
Dsec\GM13232-PA 247 GM13232-PA 24..228 25..242 464 42.7 Plus
Dsec\GM13987-PA 116 GM13987-PA 4..116 86..232 316 46.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16744-PA 257 GD16744-PA 1..257 1..257 1357 100 Plus
Dsim\GD15950-PA 247 GD15950-PA 24..228 25..242 469 43.2 Plus
Dsim\GD13268-PA 116 GD13268-PA 4..116 86..232 315 45.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16717-PA 253 GJ16717-PA 1..253 1..257 999 78.7 Plus
Dvir\GJ18736-PA 239 GJ18736-PA 19..216 25..240 478 43.5 Plus
Dvir\GJ12558-PA 123 GJ12558-PA 4..123 86..233 335 48 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19972-PA 251 GK19972-PA 1..251 1..257 1046 80.3 Plus
Dwil\GK20114-PA 240 GK20114-PA 24..236 25..245 479 41.9 Plus
Dwil\GK19749-PA 240 GK19749-PA 8..236 9..245 474 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16419-PA 257 GE16419-PA 1..257 1..257 1354 99.6 Plus
Dyak\GE17577-PA 246 GE17577-PA 24..227 25..242 488 45 Plus
Dyak\GE20626-PA 116 GE20626-PA 4..108 86..222 321 48.2 Plus

SD27025.hyp Sequence

Translation from 611 to 1384

> SD27025.hyp
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNY*

SD27025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
cv-PC 257 CG12410-PC 1..257 1..257 1446 100 Plus
cv-PB 257 CG12410-PB 1..257 1..257 1446 100 Plus
cv-PA 257 CG12410-PA 1..257 1..257 1446 100 Plus
tsg-PA 249 CG1502-PA 24..230 25..242 540 43.2 Plus
srw-PB 136 CG11582-PB 24..128 86..222 342 48.2 Plus