Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
SD27303.complete Sequence
738 bp (738 high quality bases) assembled on 2002-05-19
GenBank Submission: AY119281
> SD27303.complete
ATTCGAATGTAATTATTATTTAGAAACAACAACTTTAGGATTTGCTCCAA
ACATTTTTTTTATTGTTTTTATCATTTGGAAAACCGAGTCCCAACAATAA
AATCTTAATCTATGAGGGCATGACAAAGGATGGGGCAAGGAGCTAGACGA
ATATTGCGGGCGTCCCGCTCGCAGATTTGCGGTAGTCTTCGAACGGGCGA
AGGGTCCAGCACCTCAGCAAGTTGTCGAAAAGGTACACATAATCATTTTT
GTCCTGCAGGCACAAAAATTTGGAAATTCTTTTATTAAAAGCAAAAGCGA
TGTCACTCTCTACCATGAGCAATCCCTTGAGGACTTCTGAAAGTTTTTCA
TTATTGCAGTGGTAAAAAACCCAGCTGGATTGTCCGAATTTGACCAGTGC
TCGATGCTTTGGCCGTTCGCAGTCTGCCGCATTCCTGCTAGGCGTCCCAC
CCGCCCAGGATTCCTCAACCCAGGGCCATTGGGAGAGGATCCGTCGCTAA
CAGAATAAGTATATACAGACGTTCTTACGACTCGGTTTTGGGATCTAGGA
AGCCCAGGATAAATGGCAGAATGCTGCGGACTCTGAGCTTTGTCAATCAT
ATTCATTTTGATAACATAAAGATACCACTAAATTCTGTTTTTATTTTTCT
TCGTTTTCATGTTTACCTAGATTATTTTAATATATATTTACATTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
SD27303.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32582-RA | 742 | CG32582-RA | 1..698 | 1..698 | 3490 | 100 | Plus |
CG32582-RB | 568 | CG32582-RB | 231..568 | 358..695 | 1690 | 100 | Plus |
CG32582-RB | 568 | CG32582-RB | 1..232 | 1..232 | 1160 | 100 | Plus |
CG8928.b | 1239 | CG8928.b | 1132..1189 | 225..168 | 230 | 93.1 | Minus |
CG8928.b | 1239 | CG8928.b | 966..1026 | 577..517 | 230 | 91.8 | Minus |
CG8928.b | 1239 | CG8928.b | 1044..1093 | 273..224 | 205 | 94 | Minus |
CG8928.b | 1239 | CG8928.b | 902..950 | 679..631 | 185 | 91.8 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 15726118..15726512 | 115..509 | 1975 | 100 | Plus |
chrX | 22417052 | chrX | 15726574..15726761 | 508..695 | 925 | 99.5 | Plus |
chrX | 22417052 | chrX | 15725952..15726047 | 22..117 | 480 | 100 | Plus |
chrX | 22417052 | chrX | 15836182..15836288 | 117..22 | 260 | 85 | Minus |
chrX | 22417052 | chrX | 15835792..15835852 | 577..517 | 230 | 91.8 | Minus |
chrX | 22417052 | chrX | 15835958..15836015 | 225..168 | 215 | 91.4 | Minus |
chrX | 22417052 | chrX | 15835870..15835919 | 273..224 | 205 | 94 | Minus |
chrX | 22417052 | chrX | 15835728..15835776 | 679..631 | 185 | 91.8 | Minus |
chrX | 22417052 | chrX | 15836075..15836111 | 151..115 | 185 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:58:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15836280..15836674 | 115..509 | 1975 | 100 | Plus |
X | 23542271 | X | 15836736..15836926 | 508..698 | 955 | 100 | Plus |
X | 23542271 | X | 15836114..15836209 | 22..117 | 480 | 100 | Plus |
X | 23542271 | X | 15946320..15946383 | 117..54 | 245 | 92.2 | Minus |
X | 23542271 | X | 15945930..15945990 | 577..517 | 230 | 91.8 | Minus |
X | 23542271 | X | 15946096..15946153 | 225..168 | 230 | 93.1 | Minus |
X | 23542271 | X | 15946008..15946057 | 273..224 | 205 | 94 | Minus |
X | 23542271 | X | 15945866..15945914 | 679..631 | 185 | 91.8 | Minus |
X | 23542271 | X | 15946213..15946249 | 151..115 | 185 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 15844378..15844772 | 115..509 | 1975 | 100 | Plus |
X | 23527363 | X | 15844834..15845024 | 508..698 | 955 | 100 | Plus |
X | 23527363 | X | 15844212..15844307 | 22..117 | 480 | 100 | Plus |
X | 23527363 | X | 15954418..15954481 | 117..54 | 245 | 92.1 | Minus |
X | 23527363 | X | 15954194..15954251 | 225..168 | 230 | 93.1 | Minus |
X | 23527363 | X | 15954028..15954088 | 577..517 | 230 | 91.8 | Minus |
X | 23527363 | X | 15954106..15954155 | 273..224 | 205 | 94 | Minus |
X | 23527363 | X | 15954311..15954347 | 151..115 | 185 | 100 | Minus |
X | 23527363 | X | 15953964..15954012 | 679..631 | 185 | 91.8 | Minus |
X | 23527363 | X | 15954478..15954526 | 70..22 | 185 | 91.8 | Minus |
Blast to na_te.dros performed 2019-03-15 23:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 741..803 | 694..629 | 107 | 65.2 | Minus |
SD27303.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:11:31 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 15725439..15725461 | 1..23 | 100 | -> | Plus |
chrX | 15725954..15726046 | 24..116 | 100 | -> | Plus |
chrX | 15726120..15726512 | 117..509 | 100 | -> | Plus |
chrX | 15726576..15726761 | 510..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:09 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..159 | 130..288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:25 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..159 | 130..288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:18 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..159 | 130..288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:31:12 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..159 | 130..288 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:40 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..695 | 1..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:25 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..695 | 1..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:18 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..695 | 1..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:31:13 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32582-RA | 1..695 | 1..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:46 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp47-RB | 1252..1285 | 115..148 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:11:31 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15835601..15835623 | 1..23 | 100 | -> | Plus |
X | 15836116..15836208 | 24..116 | 100 | -> | Plus |
X | 15836282..15836674 | 117..509 | 100 | -> | Plus |
X | 15836738..15836923 | 510..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:11:31 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15835601..15835623 | 1..23 | 100 | -> | Plus |
X | 15836116..15836208 | 24..116 | 100 | -> | Plus |
X | 15836282..15836674 | 117..509 | 100 | -> | Plus |
X | 15836738..15836923 | 510..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:11:31 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15835601..15835623 | 1..23 | 100 | -> | Plus |
X | 15836116..15836208 | 24..116 | 100 | -> | Plus |
X | 15836282..15836674 | 117..509 | 100 | -> | Plus |
X | 15836738..15836923 | 510..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:18 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15729634..15729656 | 1..23 | 100 | -> | Plus |
arm_X | 15730149..15730241 | 24..116 | 100 | -> | Plus |
arm_X | 15730315..15730707 | 117..509 | 100 | -> | Plus |
arm_X | 15730771..15730956 | 510..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:46 Download gff for
SD27303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15844380..15844772 | 117..509 | 100 | -> | Plus |
X | 15844836..15845021 | 510..695 | 100 | | Plus |
X | 15843699..15843721 | 1..23 | 100 | -> | Plus |
X | 15844214..15844306 | 24..116 | 100 | -> | Plus |
SD27303.pep Sequence
Translation from 129 to 287
> SD27303.pep
MGQGARRILRASRSQICGSLRTGEGSSTSASCRKGTHNHFCPAGTKIWKF
FY*
Sequence SD27303.pep has no blast hits.
SD27303.hyp Sequence
Translation from 129 to 287
> SD27303.hyp
MGQGARRILRASRSQICGSLRTGEGSSTSASCRKGTHNHFCPAGTKIWKF
FY*
Sequence SD27303.hyp has no blast hits.