Clone SD27708 Report

Search the DGRC for SD27708

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:277
Well:8
Vector:pOT2
Associated Gene/TranscriptCG11593-RB
Protein status:SD27708.pep: gold
Sequenced Size:2127

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11593 2007-09-25 DGC5 pick
CG11593 2008-04-29 Release 5.5 accounting
CG11593 2008-04-29 Picked prior to 5.5
CG11593 2008-08-15 Release 5.9 accounting
CG11593 2008-12-18 5.12 accounting

Clone Sequence Records

SD27708.complete Sequence

2127 bp assembled on 2007-12-03

GenBank Submission: BT031304

> SD27708.complete
GTAACCTCGCCACTGGAGCCCTCTCGAAATTTTGTTTACTGGCATTTAAA
ATCAGCGAATTCGGGCTAAAAAGTCTTACTTATGCACCCAGCACCGATGC
CCGGAGCGACTAGATGAGTGTCTGGATGAGCGGGCCCCGAAATTTCGCAC
TAGCCACACAAATTATACGGGAAACTATGAGTTTGCACTACGCGGAATCG
GAATCTTCGCCGTCAGAGAGCAAAATGGACATCTCGGAGACGCCGACGGA
CTCAACGGGCGTCTCGCCGCTGGCGGATGATGTTTTGCCCACCGCGCCGG
AGAAGAATATCCTGAAATTGGAGCAGGCCAAGCAGGATCACGATAAGGAG
GAACTGGAGTTCAAGACGACCTCCGCGCTGGACAACAGAATACTGCGTCC
AGAGCTGCTGCCCATGGAGGCGATGCCACAACGACACAACATCATCGAGC
GCACCCTGGCCAACAGCCATCCGCTGATGTCGCCAACCAACACGGACTCA
GACTCGGAACCCTTTCAGCTGAAGAAGCAGGAGAAACAGCTGCCGAGGAG
CAACTTTCCGGACGTTGTGCCCACCACGGAGACGGTGCAGGTGAAGAACA
ACCTGAACCAATGCCGGAACAAGCCGCAGGACGCCAAGGTCAGCCTGCTA
AGGGCCAACAGTCCGGATATCCTGAGCAGCGAGTCAGATGCGGATGTGTC
CCAGTACTTGGCCGCCGTGGAGTCTAACTTTCAGTCCGTTTCCCTGATGC
CCAATGGCAATGGCAAGAAATCCAAACGATCGACTGCACTCCCTGGTGGC
GAGGACATATCTAGCCTGGATTCCATCTCCAATCACAGCTTCGACGATGA
CGAGGACATTGAGCACAATTTGGCCTCTCTAAGTCCATCGAGCTCCCTGA
TTGATGGCTTAGACGGAGAGGATGACGACGACGACTGCGAGGGTCCGGAA
CTGCTGCCCGACCACGACGACGACTTGGAACTGGACCTGGAGTTCGGTTT
GGCCACCACGCCCACGCCAAATGCTCCGGCATCGGCTACGGCTGCCTCAA
CTCTGCCACAGTATACGGCTGCTGAAGAGAGACGTGATTCGCGGAATTGG
CAGAAGATCACTTTACCGGATGGACGCACTAGGGAGATCGACATGCGGGT
CATAGAGCCCTACAAGCGTGTGCTGTCCCACGGCGGCTATCTCAAATCTG
GCGGTCAGAACGCCATTGTCATCTTTTGCGCCTGTCACCTGCCGGATAGG
TCGAGGGCCGACTACAGCTACGTGATGGACAATTTGTTTCTGTACGTGGT
CAAGACCCTGGAACAGTTGGTCACTGATGACTATGTGCTAATCTATCTGC
ATGGCGGCTCCAATAGGCGTAATGTGCCACCTTTTCCCTGGCTTAAACGG
TGTTATCAGCTGCTTGATCGCCGACTGCGCAAAAGCCTGAAGCACATGTA
TTTGGTGCATCCGACATTCTGGATAAAATCGCTGGTTTGGATGGCGCGGC
CTTTTGTGAGCACAAAGTTTTGGCGAAAGCTGGTCTACGTAAAGTCCCTG
GAGGAACTGGGCATGCACGTGGTCGTGGAGAAGGCAGCCATTCCGGAGAA
GGTCAAGCAATACGACGCCAAGCGGCACTGAGGCCCTGCGATGCCCCAGA
CTTGTTAAACGCAAAACGCTAATGCAAACTTAACGCATTCATGCCACACT
CGCTACTCGAGCCTCTGCATTCCCCATCTTCAATAAGGACTGAGGCTAAT
CCTCCAAACCGATCGTTTGCGCTCTCTCGCTATGCTTTAATTTAAGATCT
CAATCTTTGTGATACTTTATTTTTGCCTTCTCTCAGCCAAGTCGAAATCC
CCCCCAGCATTTTTCTGTGTGAAGCGTGAAGGCGTTCAGCAAAACATCGA
ACAAGTTTTTGTAGTTCTTTATTGGCAGTCGTAGAAATCGTATTAGACAC
AGACTCATATGTGTTAGGATCCTATATATACACCCACATACATAATGGTA
CCATGTAGTTATCGTGTAGCTTCCGCTTCATATATTTTATAGAGGAACAT
ACATATGCAACCAGAAACCACCAAACTTCCGAACATGTTACCTTTCCTTT
GTAGTGGCAAAAAAAAAAAAAAAAAAA

SD27708.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11593-RB 2773 CG11593-RB 207..2332 1..2126 10585 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4038197..4039419 1402..180 6085 99.8 Minus
chr3L 24539361 chr3L 4037368..4037967 2108..1509 3000 100 Minus
chr3L 24539361 chr3L 4039482..4039662 181..1 905 100 Minus
chr3L 24539361 chr3L 4038028..4038139 1510..1399 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:59:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4038811..4040033 1402..180 6085 99.8 Minus
3L 28110227 3L 4037964..4038581 2126..1509 3075 99.8 Minus
3L 28110227 3L 4040096..4040276 181..1 905 100 Minus
3L 28110227 3L 4038642..4038753 1510..1399 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4038811..4040033 1402..180 6085 99.8 Minus
3L 28103327 3L 4037964..4038581 2126..1509 3075 99.8 Minus
3L 28103327 3L 4040096..4040276 181..1 905 100 Minus
3L 28103327 3L 4038642..4038753 1510..1399 560 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:47:55 has no hits.

SD27708.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:48:45 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4037368..4037965 1511..2108 100 <- Minus
chr3L 4038028..4038138 1400..1510 100 <- Minus
chr3L 4038200..4039417 182..1399 99 <- Minus
chr3L 4039482..4039662 1..181 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:15 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 1..1455 177..1631 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:07:26 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 1..1455 177..1631 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:37:25 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 1..1455 177..1631 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:38 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 1..1455 177..1631 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:39 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 1..1455 177..1631 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:04:14 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 207..2314 1..2108 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:07:26 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 207..2314 1..2108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:37:25 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 207..2314 1..2108 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:38 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 207..2314 1..2108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:39 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
CG11593-RB 207..2314 1..2108 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:45 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4037982..4038579 1511..2108 100 <- Minus
3L 4038642..4038752 1400..1510 100 <- Minus
3L 4038814..4040031 182..1399 99 <- Minus
3L 4040096..4040276 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:45 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4037982..4038579 1511..2108 100 <- Minus
3L 4038642..4038752 1400..1510 100 <- Minus
3L 4038814..4040031 182..1399 99 <- Minus
3L 4040096..4040276 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:45 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4037982..4038579 1511..2108 100 <- Minus
3L 4038642..4038752 1400..1510 100 <- Minus
3L 4038814..4040031 182..1399 99 <- Minus
3L 4040096..4040276 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:37:25 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4037982..4038579 1511..2108 100 <- Minus
arm_3L 4038642..4038752 1400..1510 100 <- Minus
arm_3L 4038814..4040031 182..1399 99 <- Minus
arm_3L 4040096..4040276 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:41 Download gff for SD27708.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040096..4040276 1..181 100   Minus
3L 4037982..4038579 1511..2108 100 <- Minus
3L 4038642..4038752 1400..1510 100 <- Minus
3L 4038814..4040031 182..1399 99 <- Minus

SD27708.pep Sequence

Translation from 113 to 1630

> SD27708.pep
MSVWMSGPRNFALATQIIRETMSLHYAESESSPSESKMDISETPTDSTGV
SPLADDVLPTAPEKNILKLEQAKQDHDKEELEFKTTSALDNRILRPELLP
MEAMPQRHNIIERTLANSHPLMSPTNTDSDSEPFQLKKQEKQLPRSNFPD
VVPTTETVQVKNNLNQCRNKPQDAKVSLLRANSPDILSSESDADVSQYLA
AVESNFQSVSLMPNGNGKKSKRSTALPGGEDISSLDSISNHSFDDDEDIE
HNLASLSPSSSLIDGLDGEDDDDDCEGPELLPDHDDDLELDLEFGLATTP
TPNAPASATAASTLPQYTAAEERRDSRNWQKITLPDGRTREIDMRVIEPY
KRVLSHGGYLKSGGQNAIVIFCACHLPDRSRADYSYVMDNLFLYVVKTLE
QLVTDDYVLIYLHGGSNRRNVPPFPWLKRCYQLLDRRLRKSLKHMYLVHP
TFWIKSLVWMARPFVSTKFWRKLVYVKSLEELGMHVVVEKAAIPEKVKQY
DAKRH*

SD27708.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24411-PA 483 GF24411-PA 1..483 22..505 2044 87.1 Plus
Dana\GF24803-PA 474 GF24803-PA 110..242 364..503 219 33.6 Plus
Dana\GF11695-PA 540 GF11695-PA 396..524 368..501 207 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14227-PA 484 GG14227-PA 1..484 22..505 2519 97.5 Plus
Dere\GG15561-PA 476 GG15561-PA 110..242 364..503 224 33.6 Plus
Dere\GG10715-PA 540 GG10715-PA 396..524 368..501 208 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17007-PA 478 GH17007-PA 1..478 22..505 1725 77.8 Plus
Dgri\GH16152-PA 466 GH16152-PA 110..242 364..503 235 35 Plus
Dgri\GH21586-PA 546 GH21586-PA 402..530 368..501 209 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11593-PC 484 CG11593-PC 1..484 22..505 2525 100 Plus
CG11593-PB 484 CG11593-PB 1..484 22..505 2525 100 Plus
RhoGAP68F-PC 419 CG6811-PC 61..185 373..503 225 35.1 Plus
RhoGAP68F-PE 475 CG6811-PE 117..241 373..503 225 35.1 Plus
RhoGAP68F-PD 476 CG6811-PD 118..242 373..503 225 35.1 Plus
RhoGAP68F-PA 476 CG6811-PA 118..242 373..503 225 35.1 Plus
CG18812-PA 217 CG18812-PA 73..201 368..501 209 29.1 Plus
CG18812-PE 225 CG18812-PE 73..201 368..501 209 29.1 Plus
CG18812-PB 244 CG18812-PB 100..228 368..501 209 29.1 Plus
CG18812-PD 264 CG18812-PD 120..248 368..501 209 29.1 Plus
CG18812-PF 534 CG18812-PF 390..518 368..501 209 29.1 Plus
CG18812-PC 540 CG18812-PC 396..524 368..501 209 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11422-PA 486 GI11422-PA 1..486 22..505 1776 78.7 Plus
Dmoj\GI12424-PA 466 GI12424-PA 110..242 364..503 233 35 Plus
Dmoj\GI19557-PA 546 GI19557-PA 402..530 368..501 213 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16822-PA 465 GL16822-PA 1..465 22..505 1867 84 Plus
Dper\GL25156-PA 477 GL25156-PA 110..242 364..503 234 34.3 Plus
Dper\GL11245-PA 542 GL11245-PA 398..526 368..501 208 29.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23790-PA 465 GA23790-PA 1..465 22..505 1867 84 Plus
Dpse\GA23702-PA 435 GA23702-PA 68..200 364..503 232 34.3 Plus
Dpse\GA15091-PA 542 GA15091-PA 398..526 368..501 207 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14021-PA 484 GM14021-PA 1..484 22..505 2564 99.2 Plus
Dsec\GM25330-PA 476 GM25330-PA 110..242 364..503 227 34.3 Plus
Dsec\GM20761-PA 540 GM20761-PA 396..524 368..501 206 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13300-PA 484 GD13300-PA 1..484 22..505 2551 98.6 Plus
Dsim\GD14361-PA 287 GD14361-PA 110..242 364..503 229 35 Plus
Dsim\GD10224-PA 540 GD10224-PA 396..524 368..501 208 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13618-PA 489 GJ13618-PA 1..489 22..505 1710 78 Plus
Dvir\GJ12319-PA 466 GJ12319-PA 110..242 364..503 233 35 Plus
Dvir\GJ21132-PA 244 GJ21132-PA 100..228 368..501 204 29.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18025-PA 469 GK18025-PA 1..469 38..505 1560 72.7 Plus
Dwil\GK17548-PA 482 GK17548-PA 112..242 364..503 223 34.3 Plus
Dwil\GK21585-PA 553 GK21585-PA 409..537 368..501 209 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20655-PA 484 GE20655-PA 1..484 22..505 2527 97.5 Plus
Dyak\GE21888-PA 474 GE21888-PA 110..242 364..503 225 34.3 Plus
Dyak\GE23673-PA 540 GE23673-PA 396..524 368..501 208 29.1 Plus

SD27708.hyp Sequence

Translation from 113 to 1630

> SD27708.hyp
MSVWMSGPRNFALATQIIRETMSLHYAESESSPSESKMDISETPTDSTGV
SPLADDVLPTAPEKNILKLEQAKQDHDKEELEFKTTSALDNRILRPELLP
MEAMPQRHNIIERTLANSHPLMSPTNTDSDSEPFQLKKQEKQLPRSNFPD
VVPTTETVQVKNNLNQCRNKPQDAKVSLLRANSPDILSSESDADVSQYLA
AVESNFQSVSLMPNGNGKKSKRSTALPGGEDISSLDSISNHSFDDDEDIE
HNLASLSPSSSLIDGLDGEDDDDDCEGPELLPDHDDDLELDLEFGLATTP
TPNAPASATAASTLPQYTAAEERRDSRNWQKITLPDGRTREIDMRVIEPY
KRVLSHGGYLKSGGQNAIVIFCACHLPDRSRADYSYVMDNLFLYVVKTLE
QLVTDDYVLIYLHGGSNRRNVPPFPWLKRCYQLLDRRLRKSLKHMYLVHP
TFWIKSLVWMARPFVSTKFWRKLVYVKSLEELGMHVVVEKAAIPEKVKQY
DAKRH*

SD27708.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11593-PC 484 CG11593-PC 1..484 22..505 2525 100 Plus
CG11593-PB 484 CG11593-PB 1..484 22..505 2525 100 Plus
RhoGAP68F-PC 419 CG6811-PC 61..185 373..503 225 35.1 Plus
RhoGAP68F-PE 475 CG6811-PE 117..241 373..503 225 35.1 Plus
RhoGAP68F-PD 476 CG6811-PD 118..242 373..503 225 35.1 Plus