Clone SD27954 Report

Search the DGRC for SD27954

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:279
Well:54
Vector:pOT2
Associated Gene/TranscriptCG31800-RA
Protein status:SD27954.pep: gold
Sequenced Size:767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10652 2002-01-01 Sim4 clustering to Release 2
CG31800 2003-01-01 Sim4 clustering to Release 3
CG31800 2008-04-29 Release 5.5 accounting
CG31800 2008-04-29 Picked prior to 5.5
CG31800 2008-08-15 Release 5.9 accounting
CG31800 2008-12-18 5.12 accounting

Clone Sequence Records

SD27954.complete Sequence

767 bp assembled on 2007-07-05

GenBank Submission: BT031031

> SD27954.complete
AGAACACATGTTATTATTTTATTTTTGGCAGTCCATAAATTTACATAGTT
GTCAATCGCGGAGTGATTACTTATTTGTATTCATGTTCGGTAGCGTGTGA
TGAAAAGAGCGGCCGAAATGGACGAATTGACGTATCAGACAGCTGTAAAA
AAGGCCCAACTGGTTGAGAGGAATCCCCAGTTGCAGATAAACCCCATGCG
TGTGTCCATGCACCAGGAGGAGGATATCATCGAATTGGCCCAACAAATTC
AGAATGCTGATAAACAATTGAAAAACACAACTTGCCAAAAGCTGGGGGTC
ATAATGGAGCAGATCAAAATGCTTCAGGCCCAAGCGATGGAGATACTTAA
GGAGTCCACTCTCAACCGAGATCTGCACAGTGCGGCCTGCAATTTCACCA
AAAAACCCGGACACATCTATCATCTTTATCAAAGGCCATCGGGTCAAAAC
TATTTCAGCATGCTATCACCGGAAGAATGGAGTCTCTCCGTTGACCAAAC
ATTCAAAGGCAGCTACAGGTTGGAGTACGATTTGAGCTGGACCCCACTGG
ACAAGATTAAGGAGCAGGATGAGAAGCTAAAGTGGGCGGAGCAGTGCATG
CTAAAGGCACTAGATGGTGGGCGTGGTTCGGCCATGGCAATTGACTTTAA
TATAAGCAATGATTGACAGAATATATTAAAAATTATTTTTATTAACATGA
GGTTGTACCCAAACTTCGATGTTACTGATATTAAAATTATAAAAGCTCAA
AAAAAAAAAAAAAAAAA

SD27954.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31800-RA 879 CG31800-RA 49..796 1..748 3740 100 Plus
mib2.c 3929 mib2.c 1..69 139..71 345 100 Minus
mib2-RA 4097 mib2-RA 1..69 139..71 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19032276..19032549 748..475 1370 100 Minus
chr2L 23010047 chr2L 19032607..19032771 475..311 825 100 Minus
chr2L 23010047 chr2L 19032824..19032982 312..154 795 100 Minus
chr2L 23010047 chr2L 19033039..19033192 154..1 770 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:59:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19033657..19033930 748..475 1370 100 Minus
2L 23513712 2L 19033988..19034152 475..311 825 100 Minus
2L 23513712 2L 19034205..19034363 312..154 795 100 Minus
2L 23513712 2L 19034420..19034573 154..1 770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19033657..19033930 748..475 1370 100 Minus
2L 23513712 2L 19033988..19034152 475..311 825 100 Minus
2L 23513712 2L 19034205..19034363 312..154 795 100 Minus
2L 23513712 2L 19034420..19034573 154..1 770 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:25:18 has no hits.

SD27954.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:26:38 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19032608..19032769 313..474 100 <- Minus
chr2L 19032824..19032981 155..312 100 <- Minus
chr2L 19033039..19033192 1..154 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:23 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..549 118..666 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:05:27 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..549 118..666 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:15:00 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..549 118..666 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:13:17 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..549 118..666 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:04 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..549 118..666 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:32:38 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..631 118..748 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:05:27 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..631 118..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:00 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 4..751 1..748 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:13:17 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 1..631 118..748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:04 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
CG31800-RA 4..751 1..748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:38 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19034205..19034362 155..312 100 <- Minus
2L 19034420..19034573 1..154 100   Minus
2L 19033657..19033930 475..748 100 <- Minus
2L 19033989..19034150 313..474 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:38 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19034205..19034362 155..312 100 <- Minus
2L 19034420..19034573 1..154 100   Minus
2L 19033657..19033930 475..748 100 <- Minus
2L 19033989..19034150 313..474 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:38 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19034205..19034362 155..312 100 <- Minus
2L 19034420..19034573 1..154 100   Minus
2L 19033657..19033930 475..748 100 <- Minus
2L 19033989..19034150 313..474 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:00 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19033657..19033930 475..748 100 <- Minus
arm_2L 19033989..19034150 313..474 100 <- Minus
arm_2L 19034205..19034362 155..312 100 <- Minus
arm_2L 19034420..19034573 1..154 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:39:08 Download gff for SD27954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19033657..19033930 475..748 100 <- Minus
2L 19033989..19034150 313..474 100 <- Minus
2L 19034205..19034362 155..312 100 <- Minus
2L 19034420..19034573 1..154 100   Minus

SD27954.hyp Sequence

Translation from 99 to 665

> SD27954.hyp
MKRAAEMDELTYQTAVKKAQLVERNPQLQINPMRVSMHQEEDIIELAQQI
QNADKQLKNTTCQKLGVIMEQIKMLQAQAMEILKESTLNRDLHSAACNFT
KKPGHIYHLYQRPSGQNYFSMLSPEEWSLSVDQTFKGSYRLEYDLSWTPL
DKIKEQDEKLKWAEQCMLKALDGGRGSAMAIDFNISND*

SD27954.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31800-PA 182 CG31800-PA 1..182 7..188 948 100 Plus

SD27954.pep Sequence

Translation from 99 to 665

> SD27954.pep
MKRAAEMDELTYQTAVKKAQLVERNPQLQINPMRVSMHQEEDIIELAQQI
QNADKQLKNTTCQKLGVIMEQIKMLQAQAMEILKESTLNRDLHSAACNFT
KKPGHIYHLYQRPSGQNYFSMLSPEEWSLSVDQTFKGSYRLEYDLSWTPL
DKIKEQDEKLKWAEQCMLKALDGGRGSAMAIDFNISND*

SD27954.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15218-PA 181 GF15218-PA 1..181 7..188 847 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21660-PA 182 GG21660-PA 1..182 7..188 915 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10888-PA 181 GH10888-PA 4..176 9..184 678 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31800-PA 182 CG31800-PA 1..182 7..188 948 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13030-PA 180 GI13030-PA 4..180 9..188 700 72.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19223-PA 181 GL19223-PA 1..181 7..188 811 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16486-PA 181 GA16486-PA 1..181 7..188 815 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17039-PA 182 GM17039-PA 1..182 7..188 941 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21787-PA 182 GD21787-PA 1..182 7..188 946 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11570-PA 179 GJ11570-PA 4..179 9..188 730 73.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12680-PA 182 GE12680-PA 1..182 7..188 926 94 Plus