Clone TA01224 Report

Search the DGRC for TA01224

Clone and Library Details

Library:TA
Tissue Source:D melanogaster total adult RNA
Created by: 
Date Registered:2007-04-30
Comments: 
Original Plate Number:12
Well:24
Vector:pOTB7_DraIII
Associated Gene/TranscriptRpS6-RB
Protein status:TA01224.pep: gold
Sequenced Size:988

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RpS6-RB 2008-01-01 Library screening

Clone Sequence Records

TA01224.complete Sequence

988 bp assembled on 2010-01-12

GenBank Submission: BT120122.1

> TA01224.complete
CTTTTTCAACCCTGCGCTCGCAGCCAACAGACCTCCGCCGTTTCTTTTTT
TTTCTGCGTTGCGTGCAAACAGACCGACAATATGAAGCTCAACGTTTCCT
ATCCCGCGACGGGATGCCAAAAGCTATTCGAAGTGGTCGACGAGCACAAG
CTGCGCGTCTTCTACGAGAAGCGTATGGGACAGGTTGTGGAGGCCGATAT
CCTCGGTGACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACG
ACAAGCAGGGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTG
CGTCTGCTCCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGG
CGAGCGTAAGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGT
CTGTGCTGGCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGT
CTCACCGACACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAA
GATCCGCAAGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCG
TTGTGCGTCGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAG
GCCCCCAAAATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCA
CCGTCGCATTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTT
CCGCCGACTACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCC
AAGCGCGAGGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAA
GAGCTCTGTCTCCAGCGACAAGAAGTAAACACCGCGACACGGAACCCACA
TTCTTCGTTTAAGCAGAAACTGAACGTTGATCACAACCAAATGATCCACG
AGAGGAGAAATAAAACTTTGTAACCATTTATGTTAAATAAACGCGATAAA
TGGTATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

TA01224.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RB 1164 RpS6-RB 48..1007 1..960 4785 99.8 Plus
RpS6-RA 1228 RpS6-RA 352..1226 86..960 4360 99.8 Plus
RpS6-RA 1228 RpS6-RA 32..118 1..87 435 100 Plus
nc_22436.a 547 nc_22436.a 385..511 761..886 370 87.4 Plus
nc_22436.a 547 nc_22436.a 1..60 28..87 300 100 Plus
nc_22436.a 547 nc_22436.a 307..396 668..757 270 86.6 Plus
nc_22436.a 547 nc_22436.a 72..194 307..429 195 77.2 Plus
nc_22436.a 547 nc_22436.a 203..273 468..538 175 83 Plus
nc_22436.a 547 nc_22436.a 512..547 921..956 165 97.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7791525..7792189 956..292 3310 99.8 Minus
chrX 22417052 chrX 7792701..7792908 293..86 1040 100 Minus
chrX 22417052 chrX 7793142..7793228 87..1 435 100 Minus
chrX 22417052 chrX 7789185..7789389 886..668 415 81.4 Minus
chrX 22417052 chrX 7790375..7790579 886..668 415 81.4 Minus
chrX 22417052 chrX 7789502..7789624 429..307 195 77.2 Minus
chrX 22417052 chrX 7790692..7790814 429..307 195 77.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CR11386-RB 429 CR11386-RB 284..373 668..757 270 86.6 Plus
CR11386-RB 429 CR11386-RB 49..171 307..429 195 77.2 Plus
CR11386-RB 429 CR11386-RB 362..429 761..828 175 83.8 Plus
CR11386-RB 429 CR11386-RB 180..250 468..538 175 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899622..7900290 960..292 3330 99.9 Minus
X 23542271 X 7900802..7901009 293..86 1040 100 Minus
X 23542271 X 7901243..7901329 87..1 435 100 Minus
X 23542271 X 7897286..7897490 886..668 415 81.4 Minus
X 23542271 X 7898476..7898680 886..668 415 81.4 Minus
X 23542271 X 7897603..7897725 429..307 195 77.2 Minus
X 23542271 X 7898793..7898915 429..307 195 77.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7907720..7908388 960..292 3330 99.8 Minus
X 23527363 X 7908900..7909107 293..86 1040 100 Minus
X 23527363 X 7909341..7909427 87..1 435 100 Minus
X 23527363 X 7906574..7906700 886..761 370 87.4 Minus
X 23527363 X 7905384..7905510 886..761 370 87.4 Minus
X 23527363 X 7906689..7906778 757..668 270 86.6 Minus
X 23527363 X 7905499..7905588 757..668 270 86.6 Minus
X 23527363 X 7906891..7907013 429..307 195 77.2 Minus
X 23527363 X 7905701..7905823 429..307 195 77.2 Minus
X 23527363 X 7906812..7906882 538..468 175 83 Minus
X 23527363 X 7905622..7905692 538..468 175 83 Minus
X 23527363 X 7906534..7906573 960..921 170 95 Minus
X 23527363 X 7905344..7905383 960..921 170 95 Minus
Blast to na_te.dros performed on 2019-03-15 21:13:16 has no hits.

TA01224.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:14:14 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7791523..7792188 293..958 99 <- Minus
chrX 7792702..7792906 88..292 100 <- Minus
chrX 7793142..7793228 1..87 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-12 18:36:12 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..747 82..828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:52:25 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..747 82..828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:40:34 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..747 82..828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:46:22 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..747 82..828 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:59:23 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-12 18:35:44 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..958 1..958 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:52:25 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 1..958 1..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:40:34 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 3..960 1..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:22 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 3..960 1..958 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:14 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 293..958 99 <- Minus
X 7900803..7901007 88..292 100 <- Minus
X 7901243..7901329 1..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:14 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 293..958 99 <- Minus
X 7900803..7901007 88..292 100 <- Minus
X 7901243..7901329 1..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:14 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 293..958 99 <- Minus
X 7900803..7901007 88..292 100 <- Minus
X 7901243..7901329 1..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:40:34 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793657..7794322 293..958 99 <- Minus
arm_X 7794836..7795040 88..292 100 <- Minus
arm_X 7795276..7795362 1..87 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:28:36 Download gff for TA01224.complete
Subject Subject Range Query Range Percent Splice Strand
X 7907722..7908387 293..958 99 <- Minus
X 7908901..7909105 88..292 100 <- Minus
X 7909341..7909427 1..87 100   Minus

TA01224.pep Sequence

Translation from 0 to 827

> TA01224.pep
LFQPCARSQQTSAVSFFFCVACKQTDNMKLNVSYPATGCQKLFEVVDEHK
LRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRV
RLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPG
LTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSK
APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA
KREEAKRRRSASIRESKSSVSSDKK*

TA01224.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21093-PA 248 GF21093-PA 1..248 28..275 1252 96.8 Plus
Dana\GF10419-PA 249 GF10419-PA 1..226 28..253 958 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17600-PA 222 GG17600-PA 1..222 28..275 1102 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24620-PA 248 GH24620-PA 1..238 28..265 1187 95 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PB 248 CG10944-PB 1..248 28..275 1251 100 Plus
RpS6-PA 217 CG10944-PA 1..217 59..275 1087 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11119-PA 248 GI11119-PA 1..238 28..265 1181 95 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18222-PA 236 GL18222-PA 2..236 41..275 1175 96.6 Plus
Dper\GL17130-PA 218 GL17130-PA 1..204 28..256 667 63.3 Plus
Dper\GL25484-PA 61 GL25484-PA 2..49 158..205 196 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10657-PA 248 GA10657-PA 1..248 28..275 1250 96.8 Plus
Dpse\GA23494-PA 243 GA23494-PA 1..229 28..256 801 71.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11965-PA 246 GM11965-PA 1..236 28..265 980 81.9 Plus
Dsec\GM11553-PA 144 GM11553-PA 5..144 90..275 330 51.1 Plus
Dsec\GM11558-PA 144 GM11558-PA 5..144 90..275 330 51.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16145-PA 248 GD16145-PA 1..248 28..275 1280 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15976-PA 248 GJ15976-PA 1..248 28..275 1253 97.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25015-PA 248 GK25015-PA 1..248 28..275 1250 96.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\RpS6-PA 222 GE17500-PA 1..222 28..275 1102 87.9 Plus

TA01224.hyp Sequence

Translation from 0 to 827

> TA01224.hyp
LFQPCARSQQTSAVSFFFCVACKQTDNMKLNVSYPATGCQKLFEVVDEHK
LRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRV
RLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPG
LTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSK
APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA
KREEAKRRRSASIRESKSSVSSDKK*

TA01224.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PB 248 CG10944-PB 1..248 28..275 1251 100 Plus
RpS6-PA 217 CG10944-PA 1..217 59..275 1087 100 Plus