Clone TA01267 Report

Search the DGRC for TA01267

Clone and Library Details

Library:TA
Tissue Source:D melanogaster total adult RNA
Created by: 
Date Registered:2007-04-30
Comments: 
Original Plate Number:12
Well:67
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG5402-RA
Protein status:TA01267.pep: gold
Sequenced Size:666

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5402 2008-04-29 Release 5.5 accounting
CG5402 2008-08-15 Release 5.9 accounting
CG5402 2008-12-18 5.12 accounting

Clone Sequence Records

TA01267.complete Sequence

666 bp assembled on 2007-08-08

GenBank Submission: BT031035

> TA01267.complete
AGACATTTGATCACATCTACTTGTTGGTGTAGGATAGAAGAAAAGCAATC
CATAAATATAACGTCATGAAACTGTTAATATGGTTGTGCCTCCTCGGCTT
CCTGGCCAGTGCCTATGGCATTTTCCTGGACAAGATTACCGGTCGAGGGG
ATTCATCTGGAAACGGCCTACTAGACGATATCTTTGGACTCGAAGACTCG
GATAACAGCAGCCACAACAAAACCTCCCAACATGCATTGCCAGCGTCGGG
AATTTTTACTCCGGTTAAAGTAGCTGTTGACGTTATTCAAAATATATGGG
ATGAATTTTCTAAGGGAGTTTTAGGCCTTATGGGCAGTTTTGGTACCGGT
GATGATGGAGGCGAATCACCGCCGTCTGGGAATACAGCGCCTGTCACAAC
AGAGTCTAGTTTGCCATCGCAAGAAACCACAACGACTAGAACAACGCCGT
TTACAACAACGGAATCCAGAACGGAATCGGTCTTGGAAACAACCACAACA
GATTCATCCACGAGTACTTTGCCGCCATAAGGAGAAATTCTGTCGCCTAA
CCTTCGCATCGGATATTGCTTGTCATTGTTTGTTTCCCAGCTGCTTTCTG
TCTGGTGTATTTAAACAACGAGAATGTAAATATAAGTACCAGCCACGCTT
CCAAAAAAAAAAAAAA

TA01267.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-RA 721 CG5402-RA 25..675 1..651 3255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23325013..23325351 651..313 1665 99.4 Minus
chr3R 27901430 chr3R 23325601..23325915 315..1 1560 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:59:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27502091..27502429 651..313 1695 100 Minus
3R 32079331 3R 27502679..27502993 315..1 1575 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27242922..27243260 651..313 1695 100 Minus
3R 31820162 3R 27243510..27243824 315..1 1575 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:37:10 has no hits.

TA01267.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:38:16 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23325602..23325915 1..314 99   Minus
chr3R 23325012..23325349 315..652 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:34 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..465 66..530 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:03 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..465 66..530 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:03:11 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..465 66..530 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:33 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..465 66..530 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:41 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..465 66..530 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:13 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..613 38..650 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:02 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..613 38..650 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:11 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..614 38..652 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:34 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..613 38..650 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:41 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 1..614 38..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:16 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27502090..27502427 315..652 99 <- Minus
3R 27502680..27502993 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:16 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27502090..27502427 315..652 99 <- Minus
3R 27502680..27502993 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:16 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27502090..27502427 315..652 99 <- Minus
3R 27502680..27502993 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:11 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23327812..23328149 315..652 99 <- Minus
arm_3R 23328402..23328715 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:34 Download gff for TA01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27242921..27243258 315..652 99 <- Minus
3R 27243511..27243824 1..314 100   Minus

TA01267.hyp Sequence

Translation from 65 to 529

> TA01267.hyp
MKLLIWLCLLGFLASAYGIFLDKITGRGDSSGNGLLDDIFGLEDSDNSSH
NKTSQHALPASGIFTPVKVAVDVIQNIWDEFSKGVLGLMGSFGTGDDGGE
SPPSGNTAPVTTESSLPSQETTTTRTTPFTTTESRTESVLETTTTDSSTS
TLPP*

TA01267.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-PA 154 CG5402-PA 1..154 1..154 795 100 Plus

TA01267.pep Sequence

Translation from 65 to 529

> TA01267.pep
MKLLIWLCLLGFLASAYGIFLDKITGRGDSSGNGLLDDIFGLEDSDNSSH
NKTSQHALPASGIFTPVKVAVDVIQNIWDEFSKGVLGLMGSFGTGDDGGE
SPPSGNTAPVTTESSLPSQETTTTRTTPFTTTESRTESVLETTTTDSSTS
TLPP*

TA01267.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18709-PA 203 GF18709-PA 1..129 1..122 174 38.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12113-PA 151 GG12113-PA 1..151 1..154 480 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-PA 154 CG5402-PA 1..154 1..154 795 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10105-PA 154 GM10105-PA 1..154 1..154 571 87 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18077-PA 155 GD18077-PA 1..155 1..154 528 87.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10561-PA 151 GE10561-PA 1..96 1..105 265 57.8 Plus