Clone TA01352 Report

Search the DGRC for TA01352

Clone and Library Details

Library:TA
Tissue Source:D melanogaster total adult RNA
Created by: 
Date Registered:2007-04-30
Comments: 
Original Plate Number:13
Well:52
Vector:pOTB7_DraIII
Associated Gene/TranscriptVm26Ab-RA
Protein status:TA01352.pep: gold
Sequenced Size:654

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Vm26Ab 2008-04-29 Release 5.5 accounting
Vm26Ab 2008-08-15 Release 5.9 accounting
Vm26Ab 2008-12-18 5.12 accounting

Clone Sequence Records

TA01352.complete Sequence

654 bp assembled on 2007-08-08

GenBank Submission: BT031036.1

> TA01352.complete
ACAGTCAGCCTTCGTTCGTCACTTCAGCAGCAAGTAGAGACAGCTCAAGA
ACCATCCGCAATGGCATTCAACTTTGGTCACCTCCTCATCGCCGGCCTCG
TGGCCTTGTCCGCCGTGTCCTCGGAGACCATCCAGCTGCAGCCCACTCAG
GGCATCCTCATCCCCGCCCCGCTGGCCGAGAACATCCGTGTGTCGCGTGC
CGCCTACGGAGGATACGGCGCTGCCCCAGCCGCCCCATCGTACTCCGCCC
CAGCCGCTCCCGCTGCCCAGGCCTACTCTGCTCCCGCTGCCCCAGCCTAC
TCCGCACCCGCTGCTCCCGCCTACTCCGCACCCGCTGCTCCTGCCTACTC
TGCTCCCGCTGCCCCAGCTTACTCTGCCCCAGCCGCACCAGCTTACTCCG
CACCCGCCTCCATTCCGTCGCCGCCGTGCCCCAAGAACTACCTGTTCAGC
TGCCAGCCCTCCCTGCAGCCCGTGCCCTGCTCCGCCCCAGCTCAGTCCTA
CGGATCCGCCGGTGCCTACTCCCAGTACGTGCCCCAGTACGCCGTGCCCT
TCGTCCGCGAACTTTAAGGATCGAAACGAATCTGACTTGACATCTGAACC
TAAGAATAAAGTAATGCTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

TA01352.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Ab-RA 625 Vm26Ab-RA 3..625 1..623 3115 100 Plus
Vm34Ca-RA 491 Vm34Ca-RA 240..371 398..529 300 81.8 Plus
Vm26Aa-RA 641 Vm26Aa-RA 310..405 427..522 255 84.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5956057..5956679 1..623 3115 100 Plus
chr2L 23010047 chr2L 5956336..5956464 256..384 360 85.3 Plus
chr2L 23010047 chr2L 5956312..5956440 280..408 360 85.3 Plus
chr2L 23010047 chr2L 13409923..13410054 529..398 300 81.8 Minus
chr2L 23010047 chr2L 5958987..5959082 522..427 255 84.4 Minus
chr2L 23010047 chr2L 5956310..5956391 326..407 230 85.4 Plus
chr2L 23010047 chr2L 5956382..5956463 254..335 230 85.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:59:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5957006..5957634 1..629 3130 99.8 Plus
2L 23513712 2L 5957261..5957389 280..408 360 85.3 Plus
2L 23513712 2L 5957285..5957413 256..384 360 85.3 Plus
2L 23513712 2L 13411261..13411392 529..398 300 81.8 Minus
2L 23513712 2L 5959936..5960031 522..427 255 84.4 Minus
2L 23513712 2L 5957259..5957340 326..407 230 85.4 Plus
2L 23513712 2L 5957331..5957412 254..335 230 85.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5957006..5957634 1..629 3130 99.8 Plus
2L 23513712 2L 13411261..13411392 529..398 300 81.8 Minus
2L 23513712 2L 5959936..5960031 522..427 255 84.3 Minus
Blast to na_te.dros performed 2019-03-16 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10408..10496 419..333 108 63 Minus

TA01352.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:00:19 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5956057..5956300 1..244 100 == Plus
chr2L 5956483..5956679 427..624 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:11:36 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 1..507 61..567 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:04 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 1..507 61..567 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:13 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 1..507 61..567 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:35 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 1..507 61..567 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:26 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 1..507 61..567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:15 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 3..625 1..623 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:04 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 3..625 1..623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:13 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 3..625 1..623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:36 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 3..625 1..623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:26 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Ab-RA 3..625 1..623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:19 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5957006..5957628 1..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:19 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5957006..5957628 1..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:19 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5957006..5957628 1..624 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:13 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5957006..5957628 1..624 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:36 Download gff for TA01352.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5957006..5957628 1..624 99   Plus

TA01352.pep Sequence

Translation from 0 to 566

> TA01352.pep
TVSLRSSLQQQVETAQEPSAMAFNFGHLLIAGLVALSAVSSETIQLQPTQ
GILIPAPLAENIRVSRAAYGGYGAAPAAPSYSAPAAPAAQAYSAPAAPAY
SAPAAPAYSAPAAPAYSAPAAPAYSAPAAPAYSAPASIPSPPCPKNYLFS
CQPSLQPVPCSAPAQSYGSAGAYSQYVPQYAVPFVREL*

TA01352.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15591-PA 163 GF15591-PA 113..163 138..188 251 96.1 Plus
Dana\GF21650-PA 118 GF21650-PA 68..112 137..181 196 86.7 Plus
Dana\GF14293-PA 147 GF14293-PA 77..127 138..183 160 70.6 Plus
Dana\GF15128-PA 105 GF15128-PA 24..68 136..180 157 64.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25107-PA 174 GG25107-PA 1..174 21..188 732 93.1 Plus
Dere\GG10199-PA 119 GG10199-PA 68..113 136..181 194 84.8 Plus
Dere\GG24269-PA 142 GG24269-PA 72..117 138..183 170 78.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11015-PA 170 GH11015-PA 124..169 143..188 225 93.5 Plus
Dgri\GH11097-PA 106 GH11097-PA 55..100 136..181 189 82.6 Plus
Dgri\GH10720-PA 130 GH10720-PA 62..107 138..183 173 76.1 Plus
Dgri\GH10719-PA 144 GH10719-PA 76..121 138..183 168 71.7 Plus
Dgri\GH24704-PA 692 GH24704-PA 449..522 74..136 144 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Ab-PB 168 CG9046-PB 1..168 21..188 866 100 Plus
Vm26Ab-PA 168 CG9046-PA 1..168 21..188 866 100 Plus
Vm34Ca-PA 119 CG9271-PA 32..113 70..181 302 58.9 Plus
Vml-PB 578 CG34333-PB 154..275 74..183 299 57.7 Plus
Vml-PA 578 CG34333-PA 154..275 74..183 299 57.7 Plus
Vml-PB 578 CG34333-PB 98..212 74..183 292 58.1 Plus
Vml-PA 578 CG34333-PA 98..212 74..183 292 58.1 Plus
Vml-PB 578 CG34333-PB 320..434 74..183 291 57.5 Plus
Vml-PA 578 CG34333-PA 320..434 74..183 291 57.5 Plus
Vml-PB 578 CG34333-PB 122..236 74..183 289 57.8 Plus
Vml-PA 578 CG34333-PA 122..236 74..183 289 57.8 Plus
Vml-PB 578 CG34333-PB 50..180 48..183 288 53.2 Plus
Vml-PA 578 CG34333-PA 50..180 48..183 288 53.2 Plus
Vml-PB 578 CG34333-PB 344..450 74..183 287 59.5 Plus
Vml-PA 578 CG34333-PA 344..450 74..183 287 59.5 Plus
Vml-PB 578 CG34333-PB 186..298 74..183 277 56 Plus
Vml-PA 578 CG34333-PA 186..298 74..183 277 56 Plus
Vml-PB 578 CG34333-PB 392..577 74..168 267 39.7 Plus
Vml-PA 578 CG34333-PA 392..577 74..168 267 39.7 Plus
Vml-PB 578 CG34333-PB 288..426 74..183 258 49.3 Plus
Vml-PA 578 CG34333-PA 288..426 74..183 258 49.3 Plus
Vml-PB 578 CG34333-PB 218..386 37..183 253 42.1 Plus
Vml-PA 578 CG34333-PA 218..386 37..183 253 42.1 Plus
Vml-PB 578 CG34333-PB 345..462 56..174 252 51.2 Plus
Vml-PA 578 CG34333-PA 345..462 56..174 252 51.2 Plus
Vml-PB 578 CG34333-PB 179..314 56..183 223 44.5 Plus
Vml-PA 578 CG34333-PA 179..314 56..183 223 44.5 Plus
Vm32E-PB 116 CG16874-PB 15..79 110..180 211 59.2 Plus
Vm32E-PA 116 CG16874-PA 15..79 110..180 211 59.2 Plus
Vm26Aa-PB 141 CG9048-PB 70..117 136..183 208 77.1 Plus
Vm26Aa-PA 141 CG9048-PA 70..117 136..183 208 77.1 Plus
CG31626-PB 285 CG31626-PB 93..249 46..183 195 42.8 Plus
CG31626-PA 285 CG31626-PA 93..249 46..183 195 42.8 Plus
Muc91C-PB 949 CG7709-PB 288..424 48..169 191 44.3 Plus
Muc91C-PA 950 CG7709-PA 289..425 48..169 191 44.3 Plus
CG2962-PA 376 CG2962-PA 242..357 39..179 189 43.2 Plus
Muc91C-PB 949 CG7709-PB 358..506 48..183 189 39.6 Plus
Muc91C-PA 950 CG7709-PA 359..507 48..183 189 39.6 Plus
Muc91C-PB 949 CG7709-PB 255..395 48..183 184 43.3 Plus
Muc91C-PA 950 CG7709-PA 256..396 48..183 184 43.3 Plus
CG31626-PB 285 CG31626-PB 26..170 71..183 180 40 Plus
CG31626-PA 285 CG31626-PA 26..170 71..183 180 40 Plus
CG11585-PB 342 CG11585-PB 177..291 65..169 180 46.1 Plus
CG31626-PB 285 CG31626-PB 55..180 74..178 178 46.1 Plus
CG31626-PA 285 CG31626-PA 55..180 74..178 178 46.1 Plus
psd-PB 381 CG9050-PB 156..272 68..177 176 47.6 Plus
psd-PA 381 CG9050-PA 156..272 68..177 176 47.6 Plus
CG31626-PB 285 CG31626-PB 134..269 46..144 175 45.7 Plus
CG31626-PA 285 CG31626-PA 134..269 46..144 175 45.7 Plus
psd-PB 381 CG9050-PB 186..278 71..165 173 55.3 Plus
psd-PA 381 CG9050-PA 186..278 71..165 173 55.3 Plus
CG31626-PB 285 CG31626-PB 142..282 75..186 171 46.2 Plus
CG31626-PA 285 CG31626-PA 142..282 75..186 171 46.2 Plus
CG32564-PA 409 CG32564-PA 205..351 55..176 166 43.3 Plus
CG11350-PC 456 CG11350-PC 11..171 19..172 166 37.3 Plus
Nup58-PA 546 CG7360-PA 38..190 37..183 160 35.9 Plus
CG2962-PA 376 CG2962-PA 207..375 70..171 159 39.1 Plus
CG31626-PB 285 CG31626-PB 179..280 46..140 158 48.1 Plus
CG31626-PA 285 CG31626-PA 179..280 46..140 158 48.1 Plus
CG13674-PB 137 CG13674-PB 20..102 51..135 158 46 Plus
CG13674-PA 137 CG13674-PA 20..102 51..135 158 46 Plus
Muc91C-PB 949 CG7709-PB 388..512 48..169 157 39.5 Plus
Muc91C-PA 950 CG7709-PA 389..513 48..169 157 39.5 Plus
CG11350-PC 456 CG11350-PC 60..189 56..172 157 42.4 Plus
CG32603-PA 345 CG32603-PA 67..240 13..185 154 30.8 Plus
CG13674-PB 137 CG13674-PB 48..132 59..141 153 44.7 Plus
CG13674-PA 137 CG13674-PA 48..132 59..141 153 44.7 Plus
CG11585-PB 342 CG11585-PB 140..277 54..185 152 39.1 Plus
CG32564-PA 409 CG32564-PA 141..278 69..184 152 46.8 Plus
CG45069-PB 129 CG45069-PB 27..119 67..142 149 54.8 Plus
CG45069-PA 129 CG45069-PA 27..119 67..142 149 54.8 Plus
CG11350-PC 456 CG11350-PC 329..419 74..169 148 48 Plus
CG2962-PA 376 CG2962-PA 225..337 74..183 147 42.4 Plus
CG13679-PB 119 CG13679-PB 12..106 62..141 147 44.2 Plus
CG32564-PA 409 CG32564-PA 147..318 37..179 146 41.6 Plus
CG13674-PB 137 CG13674-PB 26..121 80..164 145 38.5 Plus
CG13674-PA 137 CG13674-PA 26..121 80..164 145 38.5 Plus
CG13679-PB 119 CG13679-PB 25..106 53..135 141 46.5 Plus
CG45069-PB 129 CG45069-PB 13..121 67..185 139 41.5 Plus
CG45069-PA 129 CG45069-PA 13..121 67..185 139 41.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17534-PA 155 GI17534-PA 109..154 143..188 227 93.5 Plus
Dmoj\GI18220-PA 121 GI18220-PA 71..115 137..181 193 84.4 Plus
Dmoj\GI11326-PA 132 GI11326-PA 62..112 138..183 172 70.6 Plus
Dmoj\GI11336-PA 128 GI11336-PA 58..103 138..183 169 71.7 Plus
Dmoj\GI18145-PA 82 GI18145-PA 13..69 128..181 146 59.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19046-PA 95 GL19046-PA 44..94 138..188 248 94.1 Plus
Dper\GL25706-PA 132 GL25706-PA 82..126 137..181 193 86.7 Plus
Dper\GL19099-PA 147 GL19099-PA 76..126 138..183 173 76.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21501-PA 177 GA21501-PA 125..176 137..188 248 92.3 Plus
Dpse\GA25403-PA 132 GA25403-PA 82..126 137..181 193 86.7 Plus
Dpse\GA21661-PA 132 GA21661-PA 82..126 137..181 193 86.7 Plus
Dpse\GA21503-PA 147 GA21503-PA 76..126 138..183 173 76.5 Plus
Dpse\GA22863-PA 610 GA22863-PA 10..153 28..136 149 45.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18584-PA 168 GM18584-PA 1..168 21..188 775 100 Plus
Dsec\GM25531-PA 119 GM25531-PA 68..113 136..181 194 84.8 Plus
Dsec\GM17983-PA 141 GM17983-PA 72..122 138..183 173 76.5 Plus
Dsec\GM11107-PA 118 GM11107-PA 21..81 116..180 164 61.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23372-PA 168 GD23372-PA 1..168 21..188 769 99.4 Plus
Dsim\GD22620-PA 141 GD22620-PA 72..122 138..183 173 76.5 Plus
Dsim\GD22183-PA 118 GD22183-PA 38..81 139..180 147 65.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15426-PA 178 GJ15426-PA 127..177 138..188 260 96.1 Plus
Dvir\GJ18127-PA 121 GJ18127-PA 71..116 136..181 185 78.3 Plus
Dvir\GJ12592-PA 133 GJ12592-PA 63..113 138..183 171 74.5 Plus
Dvir\GJ12581-PA 140 GJ12581-PA 70..120 138..183 169 74.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14709-PA 158 GK14709-PA 108..157 138..188 226 90.2 Plus
Dwil\GK15281-PA 111 GK15281-PA 60..105 137..181 186 84.8 Plus
Dwil\GK15410-PA 142 GK15410-PA 71..122 138..183 159 73.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25756-PA 167 GE25756-PA 117..167 138..188 266 100 Plus
Dyak\GE11602-PA 119 GE11602-PA 68..113 136..181 194 84.8 Plus
Dyak\GE18966-PA 141 GE18966-PA 71..116 138..183 164 76.1 Plus
Dyak\GE12948-PA 115 GE12948-PA 41..78 143..180 139 68.4 Plus

TA01352.hyp Sequence

Translation from 2 to 589

> TA01352.hyp
SQPSFVTSAASRDSSRTIRNGIQLWSPPHRRPRGLVRRVLGDHPAAAHSG
HPHPRPAGREHPCVACRLRRIRRCPSRPIVLRPSRSRCPGLLCSRCPSLL
RTRCSRLLRTRCSCLLCSRCPSLLCPSRTSLLRTRLHSVAAVPQELPVQL
PALPAARALLRPSSVLRIRRCLLPVRAPVRRALRPRTLRIETNLT*
Sequence TA01352.hyp has no blast hits.