UFO01007.5prime Sequence
1210 bp (1037 high quality bases) assembled on 2008-07-03
> UFO01007.5prime
AAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCAGCATC
AAGTTGCAATCTTCGGATGAGGAGATCTTTGACACGGATATCCAGATCGC
CAAGTGCTCCGGCACTATCAAGACCATGCTGGAGGACTGCGGCATGGAGG
ACGATGAGAATGCCATTGTGCCGTTGCCCAATGTGAATTCGACGATTCTT
CGCAAGGTGCTTACCTGGGCTCACTACCACAAGGACGACCCCCAGCCAAC
GGAGGATGATGAGAGCAAGGAGAAGCGCACAGACGACATTATCTCATGGG
ATGCAGATTTCCTAAAAGTCGACCAGGGCACACTGTTTGAGCTGATATTG
GCAGCGAACTATCTGGACATTAAGGGCCTTCTGGAGCTCACCTGCAAGAC
TGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAAATACGCAAGACCT
TCAACATTAAGAAGGACTTTTCGCCCGCCGAGGAGGAGCAGGTGCGCAAG
GAGAACGAGTGGTGCGAGGAGAAGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGCCTGAACGAAAACATATTCTCATA
ACCCTTTAGGGAATAGCCAGTTTTCACCGTAACACGCCACATCTTGCGAA
TATATGTGTAGACTGCCGAAATCGTCTGCATTCACTCAGAAGCGATGAAC
GTTTCAGTTGCTCATGGCAACGGGTTACAGTGAACCTATCCATATACCAG
CACGCTCATGCCATCGATCGATGACCTCACGAGGGGGCAAGAAATGGTGG
TAATATACAG
UFO01007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 39..524 | 2430 | 100 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 39..524 | 2430 | 100 | Plus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 39..524 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 39..524 | 2430 | 100 | Plus |
| 2R | 25286936 | 2R | 12139446..12139797 | 520..169 | 440 | 75 | Minus |
| X | 23542271 | X | 19812810..19813228 | 42..457 | 260 | 71.4 | Plus |
| X | 23542271 | X | 19816453..19816565 | 345..457 | 250 | 81.4 | Plus |
| X | 23542271 | X | 19816147..19816292 | 42..187 | 235 | 77.4 | Plus |
| 2L | 23513712 | 2L | 17581473..17581534 | 42..103 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:04 has no hits.
UFO01007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:14 Download gff for
UFO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RF | 119..610 | 39..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:24 Download gff for
UFO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 683..1174 | 39..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:12 Download gff for
UFO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 298..789 | 39..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:12 Download gff for
UFO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657110..657595 | 39..524 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:24 Download gff for
UFO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551143..551628 | 39..524 | 100 | == | Plus |
