UFO01010.5prime Sequence
1206 bp (1037 high quality bases) assembled on 2008-07-03
> UFO01010.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTTCTCTAAAGC
TCCAGAAGAGGCTCGCAGCCTCCGTGCTGCGATGCGGCAAGAAGAAGGTC
TGGTTGGATCCCAATGAAATCAACGAGATCGCTAACACAAACTCGCGTCA
GAACATTCGCAAGCTTATCAAGGATGGTCTGATCATCAAGAAGCCCGTCG
TGGTCCACTCCCGTTACCGTGTGCGCAAAAACACCGAGGCCCGCCGCAAG
GGACGTCACTGCGGATTCGGAAAGCGTAAGGGTACTGCGAACGCCCGCAT
GCCTACCAAGCTGCTGTGGATGCAGCGCCAGCGCGTTCTGCGCCGCCTGT
TGAAGAAGTACCGCGACAGCAAGAAGATTGACAGGCACCTGTACCACGAC
CTGTACATGAAGTGCAAGGGTAACGTATTCAAGAACAAGCGCGTCCTCAT
GGAGTACATCCACAAGAAGAAGGCTGAGAAGCAGCGCAGCAAGATGCTGG
CTGATCAGGCCGAGGCTCGCCGACAGAAGGTGCGTGAGGCCCGCAAGCGC
CGCGAGGAGCGTATTGCCACCAAGAAGCAGGAGCTCATCGCCCTGCATGC
TAAGGAGGACGAGATCGCTGCCAAGGCCGCCACCGCGGGTCACGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGGCCAGCGGCATCAGCACCTTGTCGC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAGAAGTTGTCAAT
ATGGCCACGTTAAATCAAACTGGTGAACCTCACCCAGGATGCTGAAACGA
AAAACATATTCTCAATAAACGTTAGCAATAGCCAGCTTCACGGTAACGCA
CTCTGCAATATGTGTGTAACTGCCGAATCTCGCGTGCTATATTACACTCA
AAAGCG
UFO01010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 34..643 | 3050 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 34..643 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 643..147 | 2485 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 148..38 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:18 has no hits.
UFO01010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:43 Download gff for
UFO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 25..650 | 26..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:33 Download gff for
UFO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 26..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:54 Download gff for
UFO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 26..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:54 Download gff for
UFO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 147..653 | 99 | <- | Minus |
| 2R | 24969118..24969224 | 40..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:33 Download gff for
UFO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 147..653 | 99 | <- | Minus |
| arm_2R | 20856641..20856747 | 40..146 | 100 | <- | Minus |
