UFO01016.5prime Sequence
1217 bp (1016 high quality bases) assembled on 2008-07-03
> UFO01016.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCCACCCAAAAAGGC
GCCACCAGGTCCCAGCAAGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCA
TTGAGGACAAAACCTTCGGGCTGAAGAACAAGAAGGGCAACAAGCAGCAG
AAGTTCATCCAGCAGGTGCAGAAGCAGGTCCAGTCCGGCGGACAGCATCC
TCGCCAGGATGGCGACAAGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCG
AACAGCGCGAGATGGCGCTGATCTTCAAGCCGGTACAGACTCAGAAGGTG
GAGAAGGGCACCGATCCCAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGG
CACCTGCACCAAGGGCGACAAGTGCAAGTTCTCCCACGATCTTTCCCAGG
AGAACAAGGTCGAAAAGCGGTCCATTTATGTGGACATGCGCGACGAGGAC
GATCCGATGACCAACTGGGACGATGCCAAGCTGAAGGAGGTGGTCGAGAA
GAAGAGCTCCGGCGAAAAGCAACGTCCCACCACGGATATTATTTGCAAAT
TCTTCCTGGAAGCTGTGGAAAAATCAAAGTACGGCTGGTTCTGGGAGTGC
CCCAACGGCGGAAAGTGCATCTACCGTCACGCCTTGCCAGCTGGATATGT
GCTGAAGCGCGATAAGAAGAAGGAGGAAAAGCCCACGGAAATCTCGCTGG
TCGATTTAATTGAGAAGGAGCGCGCTGCCCTCGGTCCCAACCAGACACGC
GTCACCCTCGAGTCCTTCCCTCGCCTGAAAGAAGCGCAAGATTGCCGAGA
AGAAGGCCAAGCTGGCTGCCGAGGAAAGAGCGCAAGAAGAGTGACTTCAG
CAAGGGCAAACAGTTCGGCATCTCTGGTCGCGAAATGTTCAGCTTCATCC
GGATCTGGTCGACGACGGACCCATGAAGGAGGGCGACGCTGCTTTCTGAC
GTCTACAACAGGGAGGACGACGACGATAATGCCGTCGAGTTCAGGAACTG
GATCTGGCTGCCCTGTCGCTGGCCGCCAGAGGTGGACGGCCCGGGCACCA
TTGCTCCACCATCGACTACTGGAACAGGCACCGTAGCAGCAAAACCGTCG
CCAGCCGAGGAGCCGCGGCCGGACTAGAAGGCAATCGGTCGCTGAACGGC
TAGATGCTGACCCATCACAAGGATCCTTTGATGACTGGCCCGGGCAACGT
GGTAGTGAACATTAACG
UFO01016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8635-RB | 1447 | CG8635-RB | 134..1226 | 34..1121 | 5065 | 98.2 | Plus |
| CG8635-RA | 1572 | CG8635-RA | 259..1351 | 34..1121 | 5065 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8630439..8631013 | 1111..541 | 2260 | 96.4 | Minus |
| 2R | 25286936 | 2R | 8631072..8631508 | 540..104 | 2185 | 100 | Minus |
| 2R | 25286936 | 2R | 8631632..8631704 | 106..34 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:51 has no hits.
UFO01016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:28 Download gff for
UFO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1356 | 34..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:50 Download gff for
UFO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1356 | 34..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:05 Download gff for
UFO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1356 | 34..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:05 Download gff for
UFO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8630471..8631013 | 541..1080 | 97 | <- | Minus |
| 2R | 8631072..8631506 | 106..540 | 100 | <- | Minus |
| 2R | 8631633..8631704 | 34..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:50 Download gff for
UFO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4517976..4518518 | 541..1080 | 97 | <- | Minus |
| arm_2R | 4518577..4519011 | 106..540 | 100 | <- | Minus |
| arm_2R | 4519138..4519209 | 34..105 | 100 | | Minus |
