UFO01018.5prime Sequence
1200 bp (1030 high quality bases) assembled on 2008-07-03
> UFO01018.5prime
CGCATAAAAACGAATAGCATACATTATACGAAGTTATCAGTCGACATGTC
CGGCATTGCTATTACACGATTGGGGGAGGAGCGCAAGGCCTGGCGCAAGG
ATCACCCATTCGGGTTCGTCGCACGACCCGCCAAGAACCCTGACGGCACC
CTCAACCTGATGATCTGGGAGTGCGCCATTCCCGGCAAGAAGTCCACCCC
CTGGGAGGGCGGGCTCTACAAGCTGCGCATGATCTTCAAGGACGACTACC
CCACCTCGCCGCCCAAGTGCAAGTTCGAACCGCCGCTGTTCCACCCGAAC
GTCTATCCCTCGGGCACCGTTTGCCTGTCGCTGCTGGACGAGGAGAAGGA
CTGGCGCCCCGCCATCACCATCAAGCAAATCCTGCTGGGCATCCAGGACC
TGCTCAACGAGCCGAACATCAAGGACCCGGCCCAGGCGGAGGCCTACACC
ATCTACTGCCAGAACCGACTGGAGTACGAGAAGCGCGTGCGTGCCCAGGC
CCGCGCCATGGCGGCCACCGAGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAACAGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAA
ACTGGTGAAACTCACCCAGGGATGGCTGAGACGAAAAACATATCTCAATA
AACCCTTTAGGGAATAGGCAGGTTTCACGTACACGCCACATCTTGCGATA
TATGTGTAGAACTGCGGAAATCGTCTGGTATTCACTCAGAGCGATGAACG
TTCAGTTTGCTCATCAAACGGGTACAGTGACCTATCCATTACCGCTCACG
TCTTCATGCCATCGATCGGATGAACCATCTCTCAGGCGGCAGATGTGGCT
UFO01018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 1105 | CG3018-RD | 250..727 | 45..522 | 2345 | 99.4 | Plus |
| lwr-RC | 1363 | CG3018-RC | 254..731 | 45..522 | 2345 | 99.4 | Plus |
| lwr-RB | 1294 | CG3018-RB | 283..760 | 45..522 | 2345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 541771..542248 | 522..45 | 2345 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:28 has no hits.
UFO01018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:15 Download gff for
UFO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 271..752 | 42..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:45 Download gff for
UFO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..760 | 42..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:25 Download gff for
UFO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..760 | 42..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:25 Download gff for
UFO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 541775..542266 | 29..518 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:45 Download gff for
UFO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 541775..542266 | 29..518 | 97 | <- | Minus |
