UFO01020.5prime Sequence
1200 bp (1030 high quality bases) assembled on 2008-07-03
> UFO01020.5prime
CGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACA
TGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGCAACCCACTGCTGTGTCG
CGCATGAAGCAGGACTATATGCGCCTCAAGCGGGATCCCCTGCCGTACAT
AACCGCCGAGCCGCTGCCCAACAACATCCTCGAGTGGCACTACTGCGTCA
AGGGGCCGGAGGACTCGCCCTACTACGGCGGCTACTACCACGGCACCCTG
CTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCATCCATCTACATGCTGAC
GCCGAACGGTCGCTTCAAGACCAACACCAGACTGTGTTTGAGTATATCAG
ATTTTCATCCGGACACTTGGAACCCGACTTGGTGCGTAGGCACCATTCTC
ACTGGACTGCTGAGCTTCATGCTGGAGAGCACACCCACACTCGGATCCAT
CGAATCATCGAACTATGACAAGCAAATGTTTGCTCAAAAATCACTAGCAT
TTAACCTGCGCAACACCAACTTCTGTGAGCTGTTTCCGGAGATAGTCGAA
GAGATCAAGCAGCGGCTGCGAGGAACACAGGCGGCAGCTGCTGTGGACGG
ACCCGCTGCCAATGGAGTAAAGCGTTCCAACGGACTGGCCAACGGAGCGA
GCCTGGCATCTGCGGATGGCAATCTGGCGGTGGGCGGCTTGGCCAATCCA
CTGAATGCAGCGGACGCAATCGATGGCGGGGCGGCGGGTCAGGCGGATTT
GGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAGTGCACGGAACTCCTATC
TAAACTGGCAGTCCGTCTATTCAAACCTGGTGATCATTATCTGCTTTGCA
ATTTTTGCCCTCATTGTTAATTACGTGATCAAGACCCTGAATCAGAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATATCATATCATATCATAATCACACTAGCCTAGAGATCTGTCATGACT
GTGCTTGATTCTCACATAAAAACGCCGGCGCAACGAGCGTTCTGACAATC
AGATGAGTTCTGAGTCATACTGATCTATCACAGAGTCAGCAGCTCGATTC
ATACGCCCGGCCTGCCACTCATCGCGATACTGTTGATCATAGCATTCGGC
GCACTGAGCCATCACAATTGTCGGCGATGTAAGTGTGACCTGTAACTTGC
UFO01020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1388 | 49..895 | 4220 | 99.9 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1449 | 49..895 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532726..17533200 | 895..421 | 2360 | 99.8 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 350..49 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 421..347 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:43 has no hits.
UFO01020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:59 Download gff for
UFO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1440 | 42..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:08 Download gff for
UFO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 42..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:36 Download gff for
UFO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 42..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:36 Download gff for
UFO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532723..17533199 | 422..901 | 99 | <- | Minus |
| 3R | 17533260..17533330 | 351..421 | 100 | <- | Minus |
| 3R | 17533623..17533927 | 42..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:08 Download gff for
UFO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358445..13358921 | 422..901 | 99 | <- | Minus |
| arm_3R | 13358982..13359052 | 351..421 | 100 | <- | Minus |
| arm_3R | 13359345..13359649 | 42..350 | 98 | | Minus |
