UFO01021.5prime Sequence
1226 bp (1040 high quality bases) assembled on 2008-07-03
> UFO01021.5prime
CGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGC
TCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAACGAGTGGAGAAACC
GGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGGCTGTTTCCCACTGC
GGCACCATATGGGAGAAAATGAACACCCAGCAGCGTGGTCCGTACAACTC
AGGCGGCAAGGACGCAAATGTGGCGCAACGCGCCAAAAGGGAAAGTTCCA
ACGGCCACGGCCAGGTGGACAAGGCCCAAAGGGAGGCCACCGAGAGCTTG
ATGGACATGAAACGTACCATCGAGCGCCTCGTGCTAAACGCCAAGATGTC
CCATGATCTGGAGAATGCCAAGTTTGTCTTCGTTGCCTTCAACTACTTCA
CTAAAGCCTTGACCACCGACGTCTATGTGCCCGCCGAGTTTGCGGCATGC
GAATATTCGTTGAAGGAGGGAATCCGATCCATCTACAGCACCATGATTGA
CCCCGGTCAGATCATTTTTGGGCAAGGTAGCGATGCCCTGCTTCACTCTT
CAACCACTCACGACCTGCCGCTGCCGCCCAACGCGCTGGGGGAGAAGAAC
ATGACCAAGCTGTACCGCAACATTGTTGACTACTTATCCAAATGCCAGGG
AAAAGGCAAGACCCTAGTAGTCTTTACACCCGCCGAAAATATTACCATGG
TGAAGTCATGCTTCCGCTATTTGGAGTGCGATGATGACTTCAGGGACGGG
GGCGAAAAAATCCAGGTGTTTGATATCCAGTACTTGCTATTCATATTGAA
GAAGGAGGTCATGAATGTCGCTGATTTGAATGACGAGAAAATCAACAAAT
TCGCGACGGATGCTTTTTTTAAGAAAGACTTTTTCGAGTTTACCGCAGGG
ATTGCGTGTCAGTACCACGAGGATAATGATCGAACCAAGTACTGTACCCA
GGAGTATGGTGACTAGGATGGGCGTATTACCTTCACTGAATTTTATGTGC
GGAAGACCTGCCATAACCGTCCAACCCGGGAAAGCACATACTGCCAAACA
AACCAACTTACTTATCATAGCTCCGTACGCCCTCCTCACTCGAACCACGA
GTCCTCCTCGATCTTTTAATCCGCTTCCCGGAATCTGGGTCAGAGAAGGC
AACCGAGCTGTCGATTCTAAGAGTCGACTTTCGTCCATCAAGCTTCTTAC
AAGCCAATAAACCACCCCTTTCCATG
UFO01021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mael-RD | 2143 | CG11254-RD | 647..1825 | 46..1215 | 5030 | 96.5 | Plus |
| mael-RB | 1830 | CG11254-RB | 334..1512 | 46..1215 | 5030 | 96.5 | Plus |
| mael-RA | 1759 | CG11254-RA | 263..1441 | 46..1215 | 5030 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22724985..22725542 | 355..912 | 2790 | 100 | Plus |
| 3L | 28110227 | 3L | 22724738..22724929 | 164..355 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 22724566..22724685 | 46..165 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 22725602..22725797 | 910..1108 | 340 | 88.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:36 has no hits.
UFO01021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:34 Download gff for
UFO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RB | 327..1436 | 40..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:07 Download gff for
UFO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 257..1366 | 40..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:17 Download gff for
UFO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 257..1366 | 40..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:17 Download gff for
UFO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22724560..22724685 | 40..165 | 97 | -> | Plus |
| 3L | 22724740..22724929 | 166..355 | 100 | -> | Plus |
| 3L | 22724986..22725542 | 356..912 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:07 Download gff for
UFO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22717660..22717785 | 40..165 | 97 | -> | Plus |
| arm_3L | 22717840..22718029 | 166..355 | 100 | -> | Plus |
| arm_3L | 22718086..22718642 | 356..912 | 100 | -> | Plus |
