UFO01023.5prime Sequence
1210 bp (1023 high quality bases) assembled on 2008-07-03
> UFO01023.5prime
CAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGACGCAAATG
TCGCAGGACGAAATCATAACCAATACGAAAACAGTCCTTCAAGGCCTCGA
AGCCTTGCGAGTGGAGCATGTTTCGATTATGAACGGAATCGCCGAGGTGC
AGAAGGACAATGAAAAGTCGGACATGCTGCGAAAGAACATCGAGAACATC
GAACTGGGCCTCAGCGAGGCCCAGGTGATGATGGCCCTGACATCCCATCT
GCAGAACATCGAGGCCGAGAAGCACAAGCTTAAGACACAGGTGCGCCGCC
TCCACCAGGAGAACGCCTGGCTTCGCGACGAGCTGGCCAACACTCAGCAA
AAGTTCCAGGCATCCGAGCAGCTGGTGGCCCAACTAGAGGAGGAGAAGAA
GCACCTGGAGTTCATGGCGTCCGTGAAGAAGTACGACGAGAATCAGGAGC
AGGACGACGCTTGCGACAAGTCCCGCACCGATCCCGTGGTCGAGCTATTC
CCGGACGAGGAAAACGAGGACAGACACAACATGTCGCCCACTCCGCCCAG
CCAGTTCGCCAACCAGACTTCCGGCTACGAGATTCCAGCGCGTCTCCGTA
CTCTGCACAACCTGGTCATTCAGTATGCATCGCAGGGAAGATACGAGGTA
GCCGTTCCCCTCTGCAAGCAAGCATTGGAAGATCTCGAAAGGACAAGTGG
TCACGACCATCCCGATGTAGCAACCATGCTGAACATTTTGGCTCTCGTGT
ACCGCGATCAGAACAAGTATAAGGAGGCCGCCAATTTACTCAACGACGCT
CTGTCGATTCGAGGAAAGACACTGGGCGAGAACCATCCAGCCGTGGCGGC
CACGTTGAACAACTTGCCGTCCTCTATGGCAAACGTGGCAAGTACAAAGA
TGCCGAGCCACTGTGCAAGCGTGCCTTGGAGATCCGAGAGAAGTCCTGGG
AAAGGATCATCCCGATGTTGCCAAGCAACTTACAATCTCGCCCTGCTCTG
CCAGATCAGGCCAATACGACGAGGTGAGAGTACTACCACGAGCTCTCGAC
ATCTACGATCAAGTGGGTCCGATGATCCCAACGGTGCCAGACAAGAATAT
CTGCGCTGCCTATCTGAGCAGTAATCCCGAAACGTGAATCCTCTTAGCAG
GTCTGACCGAGCCCACGACGTGAGTTGGGGAGCACTCGCCACGCAAAACC
ACGCCCTCTT
UFO01023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-RC | 1876 | CG5433-RC | 156..1349 | 39..1206 | 5010 | 96.3 | Plus |
| Klc-RB | 1841 | CG5433-RB | 118..1311 | 39..1206 | 5010 | 96.3 | Plus |
| Klc-RA | 1843 | CG5433-RA | 120..1313 | 39..1206 | 5010 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12748056..12748657 | 640..39 | 3010 | 100 | Minus |
| 3L | 28110227 | 3L | 12747450..12747757 | 1058..759 | 1125 | 97.1 | Minus |
| 3L | 28110227 | 3L | 12747821..12747943 | 761..639 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:42 has no hits.
UFO01023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:27 Download gff for
UFO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..1199 | 29..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:10 Download gff for
UFO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..1199 | 29..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:21 Download gff for
UFO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..1199 | 29..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:21 Download gff for
UFO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12747398..12747754 | 762..1103 | 94 | <- | Minus |
| 3L | 12747821..12747941 | 641..761 | 100 | <- | Minus |
| 3L | 12748056..12748669 | 26..640 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:10 Download gff for
UFO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12740498..12740854 | 762..1103 | 94 | <- | Minus |
| arm_3L | 12740921..12741041 | 641..761 | 100 | <- | Minus |
| arm_3L | 12741156..12741769 | 26..640 | 98 | <- | Minus |
