UFO01024.5prime Sequence
704 bp (271 high quality bases) assembled on 2008-07-03
> UFO01024.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGATACACAGTCTGTTTATTGTAAACAGCGGCGGCGAGGTCTTCCTGG
AAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTGTGCGAATACTTCCTT
GACGCCCAGCGCGCTGCTCCATATGATGTGCCGCCGGTGATAGCCACGCC
CCACTACTACCTGATTACAGTGCAAAGGGACACGGGGTCTTTGGTCGCCG
CCTGCAAGCAGGAGGTGCCGCCGCCTCTTTGTCATCGAGTTCCTGCATCG
GGGGGTGGACCCCTTCCAGGACAATTTCGGCCAACTGCTCCGAATCCTGA
TCAAAGGACAATTTTGGGGCTGTTTCCAAGCTGCTGGGACAAAAGGTCCA
AAATGGCTTCCCCTGGCCCCCGAAAACAAATTCCCCAAGGAACTAATCAA
CCCCCCAAATCCCGGGCCCCCTTTCCAACCGGGGGGGGGGAAAAAAAGGA
AACCTTTTTTTCCCCCGGAAATGGGGGGGTTCCGGGGAAAAAAGGGGGGG
GAACCCAAAAAAGGGTTTTTTTTTTCGGGAGGGGGCCCCTCTTTTAAATC
GGCCCCGTTTTGAAAAACGGAAACTAGGGGGTTTTTTTTCCCGGGGAAAG
AGAATTTTAAGACCCCCCTAAAAAATTTTCTCTCTGGGGGAAAAGGGGGG
GGGC
UFO01024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..483 | 52..479 | 1445 | 90.3 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..483 | 52..479 | 1445 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7010560..7010844 | 460..175 | 700 | 85.4 | Minus |
| X | 23542271 | X | 7010899..7010988 | 175..86 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:57 has no hits.
UFO01024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:32 Download gff for
UFO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 37..357 | 46..366 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:54 Download gff for
UFO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..367 | 46..366 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:08 Download gff for
UFO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..367 | 46..366 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:08 Download gff for
UFO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7010689..7010844 | 175..331 | 96 | <- | Minus |
| X | 7010900..7010987 | 87..174 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:54 Download gff for
UFO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6904722..6904877 | 175..331 | 96 | <- | Minus |
| arm_X | 6904933..6905020 | 87..174 | 100 | <- | Minus |
