UFO01025.5prime Sequence
1220 bp (1011 high quality bases) assembled on 2008-07-03
> UFO01025.5prime
CAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATAACATA
GTCTACGACTTTGCCAAGATCACGTTTCAAGCAAAAGACAACAGGTCACC
CACTACTAACTCGAATCTGTCGTGGCAACTAAATCAGATGGCCTTGTCGG
ACATGGAGGAGATGCAGGACACATCCGAGCCCATAGCTCCACCCGAATCC
GATGACAATGTCAGCAGTGAATCGCATGACTCCGACGATGTAGACTCGCA
ATTGAGTCGCTGCGAGGACAACGATGACGACAGCGATTGCATCAGTGGAT
CCTCCAGACGCAGTTCCACTTTTGGAGCTCGAGCGGGCGTGGCTCGTCGC
AGAATGCCCGCCAGGGTGTCCAAGGACAACTTTAACCGGATCTGCAGCGC
CATCATGAAACCCATCAAAAAGAAGCAACGCAAAGAACTGAACACAAATG
CCCAAACACTTAAAAGCATCGAAAAGATCTACACCAGCAGGCGCATGAAA
AAGTTCACGCCCACCAATCTGGAGACAATCTTCGAGGAACCCAGCGATGA
GAATGCCGCCGATGCAGAGGACGACAGCGAAGAGTGCTCCATCAGCAGCC
AAGTGAAAGTAGTTAAGGTGTGGGGTCGCAAACTCCGCCGGGCAATATCC
TTCAGCGATGGCCTGAACAAGAACAAAATCCTGTCGAAGAGACGCCGCCA
GAAGGTGAAGAAGACCTTTGGCAAGCGTTTCGCACTCAAGAAAATCTCCA
TGACCGAGTTCCACGATCGTCTGAATAAGAGCTTCGACAGTGCCATGCTG
GAGGGGGATGATGCAGAGGCGGGAGGATCGGCGGAGGCCGTCAACATCCC
CAAGACATCCATGACCATGGAAAGACATACAGCTGCCGACAATGAGCAGC
CAGCACCAGTTCCTCATGCAACCGGCGGGCTTTGGAGGCAAGCTTTCTAG
ACCATTCGGTTTGGCGCGGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACACTAGCCTAGGAGAATCCTGGGTCATGACT
AGTGCTGATCCCACCAATAAAAAACCGCCCGGCGCACGAGCGTCTGAACA
AATTCCAGATGGGAAGTTCTGGAGGTCATACCTGGATCTATCAACGGAAT
TCCAAGCGAGCTCGATTCTAATACGCCCGGACATGCCAATCTAACTCGCA
GATACGTGTGTGTGAAATCA
UFO01025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tan-RB | 1657 | CG6586-RB | 316..1210 | 39..934 | 4455 | 99.9 | Plus |
| tan-RA | 1494 | CG6586-RA | 316..1210 | 39..934 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6055714..6056555 | 92..934 | 4165 | 99.9 | Plus |
| 3L | 28110227 | 3L | 6055608..6055665 | 39..96 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:15 has no hits.
UFO01025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:07 Download gff for
UFO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 274..1170 | 39..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:49 Download gff for
UFO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..1212 | 39..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:54 Download gff for
UFO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..1212 | 39..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:54 Download gff for
UFO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6055608..6055663 | 39..94 | 100 | -> | Plus |
| 3L | 6055717..6056557 | 95..937 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:49 Download gff for
UFO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6048708..6048763 | 39..94 | 100 | -> | Plus |
| arm_3L | 6048817..6049657 | 95..937 | 99 | == | Plus |
