UFO01031.5prime Sequence
1212 bp (1058 high quality bases) assembled on 2008-07-03
> UFO01031.5prime
GCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATG
ACTCTCGATTTGGATGCGCATAAGAAAGATGACAAGTTGCTGATCACAAC
CATACAGCAGGAGTATAAAATTCTGGCCGAATACAAAATGATTGAGTCGG
AGAAGTTGAGTGGGATATATGTGATACCCAGCTATGCTAACTCCTTGCAG
TGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGTATGCGGAAAGTGTTTT
TCGATTCACAATTTTGCTCCCAGATCGTTTTCCCGACGACAAAAGTCTTC
CGAGCATAATTTTCCAGCAGGATGTGATTCATCCCCATGTGTGCCCGTAC
ACCCACAGTTTGGACGTGAGCCACGCCTTCCCGGAGTGGCGCTGTGGAGA
GGATCACCTTTGGCAGCTTTTAAAGTACCTGCAAGTCATTTTCTCCGATC
CCTTGGACAGTATTCGGGGCATTGAGGTAGATAAGCTCAAAAACAGCGAG
GCTGCGGAGCTGCTGATGAATAACAAGGAGGAGTATGTTGCTCGCGTACA
GGAAAATATCAAGGAGAGCAAGGAGCATATATTTGACACCCCACCCACCG
AAGATCCGCACTACATAGTATTCGAGAAGTTCCAGCAGGACGTGCACGGG
CCCGTTCTGGAGCGCATCAAGGCCGGAAGAAGCAAGCTGACGGAGCCTTC
AGCGCAACAAGCAAATGGTGGACATGCAACTGGTCTGTCATGGGTTAAGG
AGGGCGAGTTTAAGCCACTTAGCATTGAGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGTCATTACTGATCTATCAACAGGAGTCAAGCGAGCTC
GATATCAAATTACGCCCCGCCTGCCACTCATCGCAGTACTGTTGTATTCA
TTAGCATTCTGGCGACATGCAGCATCAAAACGCATGATGAACTGATCGCA
GCGCATCAGACTTGTCGCTTGCCTTTATTTGGCCATGGTGAACGGGACCA
AGACTGCCAATTGCCGATAAATCAACTGGTGACTTCACCAGAATTGCTGA
AACCAAAAAACA
UFO01031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbx-RB | 908 | CG10536-RB | 94..825 | 48..779 | 3660 | 100 | Plus |
| cbx-RA | 1036 | CG10536-RA | 253..953 | 79..779 | 3505 | 100 | Plus |
| cbx-RC | 766 | CG10536-RC | 72..456 | 75..477 | 1735 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864593..9865070 | 779..302 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9865124..9865227 | 302..199 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 9865424..9865509 | 133..48 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 9865290..9865354 | 198..134 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:51:39 has no hits.
UFO01031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:00 Download gff for
UFO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 75..809 | 48..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:53 Download gff for
UFO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 94..828 | 48..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:13 Download gff for
UFO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 94..828 | 48..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:13 Download gff for
UFO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864589..9865069 | 303..783 | 99 | <- | Minus |
| 2R | 9865124..9865227 | 199..302 | 100 | <- | Minus |
| 2R | 9865290..9865354 | 134..198 | 100 | <- | Minus |
| 2R | 9865424..9865509 | 48..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:53 Download gff for
UFO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5752094..5752574 | 303..783 | 99 | <- | Minus |
| arm_2R | 5752629..5752732 | 199..302 | 100 | <- | Minus |
| arm_2R | 5752795..5752859 | 134..198 | 100 | <- | Minus |
| arm_2R | 5752929..5753014 | 48..133 | 100 | | Minus |
