UFO01032.5prime Sequence
1218 bp (1071 high quality bases) assembled on 2008-07-03
> UFO01032.5prime
TGCGGCCGCATAATTACGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGTCCTTCCG
GAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGGCGGAGCT
CCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCACAGAGAA
CAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGCGTGGAGA
TGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCCGGACTAC
CGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACTACCTGAC
CTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTGGCCACGC
TCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGGCGTTTCC
CTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACCAATCCGA
TCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGCAAGAACG
CAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGATCTGGAG
CTGGACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAGGTTTTGA
GGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGATCAGAACG
GATTCCAGCGTCTGGACCCCGCCTCAATCAAGGACTACTTGGCCAGCATC
CCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGACTGATCGCCAGCGCATCAGCACTGTCGC
TGGCGTATATATTTGCCAATGGGTGAAACGGGGCGAAGAGTTGTCCATTT
GCAGGTAATCGAAACCTTGGCGTCACTCCCAGGAATGCTGACGAACCATT
TCTCCAATTAACCTTTTA
UFO01032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 52..753 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12431743..12432001 | 167..425 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 12432286..12432458 | 581..753 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 12432066..12432222 | 425..581 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 12431581..12431660 | 90..169 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 12431441..12431481 | 52..92 | 205 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2524 | 1146..1087 | 120 | 66.7 | Minus |
UFO01032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:11 Download gff for
UFO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros25-RA | 109..825 | 44..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:12 Download gff for
UFO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 44..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:23 Download gff for
UFO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 44..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:23 Download gff for
UFO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12431433..12431481 | 44..92 | 91 | -> | Plus |
| 3R | 12431584..12431660 | 93..169 | 100 | -> | Plus |
| 3R | 12431746..12432001 | 170..425 | 100 | -> | Plus |
| 3R | 12432067..12432222 | 426..581 | 100 | -> | Plus |
| 3R | 12432287..12432465 | 582..761 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:12 Download gff for
UFO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8258009..8258187 | 582..761 | 98 | == | Plus |
| arm_3R | 8257468..8257723 | 170..425 | 100 | -> | Plus |
| arm_3R | 8257789..8257944 | 426..581 | 100 | -> | Plus |
| arm_3R | 8257155..8257203 | 44..92 | 91 | -> | Plus |
| arm_3R | 8257306..8257382 | 93..169 | 100 | -> | Plus |
