UFO01033.5prime Sequence
1193 bp (1034 high quality bases) assembled on 2008-07-03
> UFO01033.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACTTTCGGA
ACGCCCGTGCCCGGCAGCCGGAGATCGTGAGATCCGTGCAGAAGGATGCA
CGGTACACCAACGAGCTGGCCGAAGACTTGTCCGATGTCTTGCGCCTCAC
CGGTCCACGGAACTGGATAAAGTACAACCAGATGTGCCGACTTCTGGCGG
AGCTCAGTTACCACGGATTCGCCTCGGCCAATAACCTTCAGACCCTCGGC
GAAGAGTACACGGGGATAATACAGGTGGACGGGAACTATAAGCAGATTCC
CAGCAGATTGTTACAACTGATTGCCATTGTCCTGGAGTTTGGTGGCGACT
CCCTGTTCCAACGATTGATGCAAAAACTTGACACCTACGTGGCCAACAAT
GACGAGATTCGAACCGAGATCAAGCCGCAGCTAAAGAAGATTATTCAGAG
GCTCAGGCAATCTCCCAGCTACGTAAAGGCCCTGCACAAGTCTCTATTCT
ACTTGGACGCCAGCAAGTACCAGCTGTCCAAGCGCACCACGGGCATCAAC
TACGTACTAATCCGTCACTGGCTGCAGCCGGAATTCTCGCTGTACGGCTA
CAAGATACTGGGCGTAATCACTTTCCTGCAGGTCAGCGTTTCCTTGGCCA
TTAGTGGATGGGATGCCTGGAGAGAGCACAAGCGCCAGCAGCTAGAATCA
ATAAAGCAGGCTGGAAAGAATTTCCTGCAAAGATCTTCGAGTACAAAGGA
CGTAGATCCAAACACCCCACAGTGCATCCTTTGCCTGGAGCCACGTTCTG
ACAGCAGTTTGACTCCATGCGGCCACATCTTTTGCTGGAGCTGCCTGCTC
GAGTGCTGGAGGAGCGGGATGAGTGCCCCTTGTGCCGGGAGTCGCTGAAA
AAGTCCCAGTGATATTACTGCAAACTATGCCGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATATCATATCATATC
ATATCACAACTAGCCTAGAGATCCTGTCATGACTAGTGCTGATCCCCACA
TAAAAACGCCCGCGCACCGAGCGTTCTGGACAATCGATGAGTCTGAGTCA
TACTGGATCATCACGGAATCAGCGAGCTCGATCAGTAGCCCGACTGCCTC
TATCCATCTGTTGTTAATATTAAAGCATTCTGTCCGCAACATT
UFO01033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..947 | 34..931 | 4415 | 99.6 | Plus |
| Pex10-RA | 1487 | CG7864-RA | 506..1406 | 34..931 | 4415 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559774 | 310..924 | 2985 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1558828..1559104 | 34..310 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:48 has no hits.
UFO01033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:17 Download gff for
UFO01033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-RA | 496..1406 | 30..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:51 Download gff for
UFO01033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 30..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:59 Download gff for
UFO01033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 30..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:59 Download gff for
UFO01033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558825..1559104 | 30..310 | 98 | -> | Plus |
| 3L | 1559159..1559785 | 311..935 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:51 Download gff for
UFO01033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558825..1559104 | 30..310 | 98 | -> | Plus |
| arm_3L | 1559159..1559785 | 311..935 | 99 | -> | Plus |
