UFO01034.5prime Sequence
1196 bp (1037 high quality bases) assembled on 2008-07-03
> UFO01034.5prime
GCGGCCGCATAACTACGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGCGGACGCTGCACCAGCTGGCGATGCACCACCCAATGCCGGAGCCCC
GGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGCGGACCACACAATCCGC
AGCAGATCGCGGCACAGAAGCGTCTGCAGCAGACGCAGGCGCAGGTCGAT
GAGGTCGTGGACATCATGCGCACGAACGTGGAGAAGGTGCTGGAGCGCGA
CAGCAAGCTGTCGGAGCTGGACGACCGTGCCGATGCCTTGCAGCAGGGTG
CCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAAGAGGAAATTCTGGCTT
CAGAACTTAAAGATGATGATCATCATGGGCGTGATTGGCCTGGTTGTCGT
GGGCATTATTGCAAATAAACTTGGACTCATAGGCGGGGAGCAGCCGCCAC
AGTACCAGTATCCCCCACAGTACATGCAGCCACCGCCGCCGCCACCGCAG
CAGCCAGCCGGAGGACAGTCATCGCTGGTGGATGCGGCAGGAGCAGGAGA
CGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGCGATCACGGCGGCGTGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTTGT
CCATATTGCCACGTTTAAATCAACTGTGAAACTCACCCAGGGATGCTGAA
ACGAAAACATATCTCAATAACCCTTTAGGTATAGCCAGGTTCACGTACAC
GCCAATCTGCCAATATATGTGTAGACTGCGATCGTCTGTATCTCGAGCGA
GAACGTCAGTTGCCATGAACGGGTACAAGGGGAACCTATTCCCATA
UFO01034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nSyb-RF | 1109 | CG17248-RF | 483..1032 | 50..599 | 2750 | 100 | Plus |
| nSyb-RA | 1387 | CG17248-RA | 480..1029 | 50..599 | 2750 | 100 | Plus |
| nSyb-RG | 3027 | CG17248-RG | 559..1105 | 53..599 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1632270..1632454 | 599..415 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 1635301..1635461 | 362..202 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 1635532..1635684 | 205..53 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10250908..10251119 | 385..174 | 295 | 75.9 | Minus |
| 3L | 28110227 | 3L | 1635182..1635239 | 418..361 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:54 has no hits.
UFO01034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:06 Download gff for
UFO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RA | 489..1053 | 43..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:15 Download gff for
UFO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RA | 474..1038 | 43..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:41 Download gff for
UFO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nSyb-RA | 474..1038 | 43..609 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:41 Download gff for
UFO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1632261..1632454 | 415..609 | 97 | <- | Minus |
| 3L | 1635186..1635237 | 363..414 | 100 | <- | Minus |
| 3L | 1635301..1635459 | 204..362 | 100 | <- | Minus |
| 3L | 1635534..1635691 | 42..203 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:15 Download gff for
UFO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1632261..1632454 | 415..609 | 97 | <- | Minus |
| arm_3L | 1635186..1635237 | 363..414 | 100 | <- | Minus |
| arm_3L | 1635301..1635459 | 204..362 | 100 | <- | Minus |
| arm_3L | 1635534..1635691 | 42..203 | 96 | | Minus |
