UFO01035.5prime Sequence
1176 bp (1015 high quality bases) assembled on 2008-07-03
> UFO01035.5prime
GCGGCCGCATAATTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGAATCGACACTCGCCAAGGTGCTGCTCCTTGTGGGCAGCCTGCTGAT
CCTGTGCCGCACCAGCCACGCCTTCATCGTCAGCGTGGACGCCCACAATG
AGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCACCAAGTTTGGCGTCACC
TTCGAGGTGATCGACGGTGGCTTCCTAGACGTGGACATCAAGATCAGCGG
CCCGGATAACCATGTGATGCACGAGAGCGAAAAGGAGTCGTCCGGCAAGT
ACACCTTTGTGGCCCCCGCCAAGGGAACCTACACCGTGTGCTTCAACAAC
GAACGCAGCAGCATGACCCCCAAGCTGGTCATGTTCTCCATCGACGTGGG
TGACGCACCGCAACGTGCGCCCGGAGCACCCGGCGAGGAGGAGGTGGGCC
ACACCAAGCTGGAGGACATGATTCGGGAGCTCTCCGGCACGCTGACCAGT
GTCAAGCACGAACAGGAGTACATGCATGTGCGCGACAAGATCCATCGTTC
GGTGAACGAGAACACCAACTCGCGAGTGGTGCTGTGGTCCACCTTCGAAG
CCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGTGTACTACCTGAAACGC
TTCTTCGAGGTCAAGCGCGTCGTGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGAAGCCATCACAAACGCATGATGATCTGATC
GCAGCGGCATCAGCACTGTCGCTGCGTATAATATTTGCCATGTGAAAACG
GGGCGAGAGTGTCATATTGCCACTTCATCAACTGTGACTCACCCAAGGAA
TGGCTGAAACGAAAACCTATTCTCATTACCTAGAATGCCAGTTCACGTAC
GCCAATCTGCAATATTGTTGTGAGAA
UFO01035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHOp24-RB | 1172 | CG3564-RB | 96..719 | 51..674 | 3120 | 100 | Plus |
| CHOp24-RA | 1104 | CG3564-RA | 96..719 | 51..674 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4541216..4541554 | 192..530 | 1695 | 100 | Plus |
| X | 23542271 | X | 4541907..4542053 | 528..674 | 735 | 100 | Plus |
| X | 23542271 | X | 4541003..4541145 | 51..193 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:06 has no hits.
UFO01035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:52 Download gff for
UFO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 88..720 | 43..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:22 Download gff for
UFO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 43..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:27 Download gff for
UFO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 43..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:27 Download gff for
UFO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4540997..4541144 | 43..192 | 97 | -> | Plus |
| X | 4541217..4541551 | 193..527 | 100 | -> | Plus |
| X | 4541907..4542056 | 528..678 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:22 Download gff for
UFO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4435030..4435177 | 43..192 | 97 | -> | Plus |
| arm_X | 4435250..4435584 | 193..527 | 100 | -> | Plus |
| arm_X | 4435940..4436089 | 528..678 | 98 | == | Plus |
