UFO01036.5prime Sequence
1189 bp (1042 high quality bases) assembled on 2008-07-03
> UFO01036.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCGGGGAAAGCGGCGTG
GGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAACAAGTTCGACCAGAA
CCATGACGTCACGATTGGCATGGACTTCAAGAGCAAAGTGATGCAGGTGG
ACGGCATAGACTACAAGGTGGCCCTGTGGGATACGGCGGGCGCCGAGAGA
TTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCTCTGGGCGCCATTCT
AGTGTACGACATCACCAGCAGGGACAGCCTGGTCAAGCTGGAAACCTGGC
TGGCTGAACTGGATAGCTACAGCGACAATCCCAACATTGCCATCATTGTG
GTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGATCGCGAGGAGGGTCG
AAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGAGACCTCAGCCAAAT
GCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGGTGGAGAAGATCGTC
TCCTCCGAATACTTCAACAATGGCAATGCCTCCGCCGGTCTGGACATCGC
CAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTGTTACTGTGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGTAAGCCATCA
CAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTGTCATATGACAC
GTTAATCAACTGTGAACTCACCAGGATGGCTGAAACGAAAAACATATCTC
AATAAACCCTTTAGCAATAGGCAAGTTCACCGTACGCCAACTCTGCAATA
TGTAAACTGCGAATCGCTCGTGCAATTCACTCCAAAAGC
UFO01036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab18-RA | 833 | CG3129-RA | 152..742 | 53..643 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5671081..5671515 | 544..110 | 2175 | 100 | Minus |
| X | 23542271 | X | 5670918..5671018 | 643..543 | 505 | 100 | Minus |
| X | 23542271 | X | 5671603..5671661 | 111..53 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:34 has no hits.
UFO01036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:10 Download gff for
UFO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab-RP4-RA | 143..739 | 45..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:45 Download gff for
UFO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 45..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:48 Download gff for
UFO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 45..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:48 Download gff for
UFO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5670918..5671016 | 545..643 | 100 | <- | Minus |
| X | 5671081..5671513 | 112..544 | 100 | <- | Minus |
| X | 5671603..5671665 | 45..111 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:45 Download gff for
UFO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5564951..5565049 | 545..643 | 100 | <- | Minus |
| arm_X | 5565114..5565546 | 112..544 | 100 | <- | Minus |
| arm_X | 5565636..5565698 | 45..111 | 94 | | Minus |
