UFO01037.5prime Sequence
1273 bp (950 high quality bases) assembled on 2008-07-03
> UFO01037.5prime
CATACATTATACGAAGTTATCAGTCGACATGTCGGGAATCGCTGCCAAAA
AGATTGCCGAAGCGGAGGACCTGGTGAAGCAGGCCGAGAAGAGCTTGAAG
TTGTCCATGCTGAAATGGGTTCCTGATTACGATAGTGCTGCGGATGAGTA
TTCCAAAGCTGCCACTGCATATCGAATAGCTAAAAGTTATGATAAGAGCA
AGGAGTGTTTTCTGAAGGCAATCGACGCCTATAAAAACAACAAGTCTTGG
TTCCATGCTGCAAAGGCATACGAACAGATCATTTTGCTGTCAAAGGATGC
CGATAAGCTACACGAAGTTGAGGAATACGCCAACAAATCGGCGAGTTTGT
ATCAACAGCACGGTTCCCCAGAGGCAGCCGCATCCGCCTTGGATAAAGCC
GCCAAGTTAACTGAATCCAAGCATCCTGACATGGCTTTGCGCTTCTATCA
GCATGCTCTAGAAGTCATAATGATCGAGGATTCCGTCCGTCAAGCAGCCG
AGTATGCATCAAAAGTTTCCAGGATACTGGTCAAACTAAGGAGGTACAAC
GAAGCCACGAATGCGCTCAAAAAGGAGATCAGCTTGAATCAGCAAACGGA
ATCTTACGGACAAATTGGACGCCTAGTTGTGGCCTTGGTGATGGTCCAAC
TGGCTCGCGGGGATTCCGTGGAAGCCGAAAAGACCTTCAGGGAGTGGGGA
AACTGCTGCGAGCCAGAGGAAAGTGTCCACACTGCAGACCCTTCTGCAAG
CCCTTCGATGACGAGGATCCCGAGTAAGCTGCTAGGATGCTGGCATCCCC
ATTCATACAACATATGGATGTTGAGTACGCTACTCTATCTAAAAACATTC
CACTACCTCAGGTTATACAGATGGAAGAAGAAGGGCTGGCGACACTGCTG
CTGAAACCAACGACGCCCGAGGACAAAGAGTGGCTTGTGCGCAGGCTTTT
CTAGACAATTCGTTTTGCGCCGCGGGACCCGGTTAGTTGGTTCATAATCC
ATTAATCCATAATTCTTAATTCATAATCACACTAAGCCTAAGGGAGTTTC
CTGGGTCATGAACTAGTGGCTTTGGATTTCTTCACCAAAAAAAAAAGGCC
CGGGCGGGCAAACCGGAGACGTTTCGGAACTAAGTTCTAGAATGAGATTT
TTGAAGGTCATTACTTGGAATCTTATCACACGGATGATTCTAGGCTGAAG
CTCTGATAATTCAAATTGGGCCGCGACCTGTCACAGCTCTATCGCAAGAA
CGTGCGATGTGTGTAAAAATTCA
UFO01037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 1117 | CG3988-RA | 71..976 | 29..940 | 4320 | 98.7 | Plus |
| sei-RC | 3197 | CG3182-RC | 137..384 | 791..542 | 1170 | 98.4 | Minus |
| gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 148..843 | 625 | 73.4 | Plus |
| sei-RC | 3197 | CG3182-RC | 446..520 | 546..472 | 375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24047504..24047861 | 903..542 | 1535 | 97.5 | Minus |
| 2R | 25286936 | 2R | 24048066..24048262 | 472..276 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 24048335..24048451 | 277..161 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 10120589..10121282 | 843..148 | 575 | 72.8 | Minus |
| 2R | 25286936 | 2R | 24047923..24047997 | 546..472 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 24048639..24048708 | 161..92 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 24048769..24048833 | 93..29 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:50 has no hits.
UFO01037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:13 Download gff for
UFO01037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 50..962 | 23..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:42 Download gff for
UFO01037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 64..976 | 23..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:07 Download gff for
UFO01037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap1-RA | 64..976 | 23..940 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:07 Download gff for
UFO01037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24047504..24047859 | 544..903 | 97 | <- | Minus |
| 2R | 24047926..24047996 | 473..543 | 100 | <- | Minus |
| 2R | 24048066..24048260 | 278..472 | 100 | <- | Minus |
| 2R | 24048335..24048450 | 162..277 | 100 | <- | Minus |
| 2R | 24048639..24048706 | 94..161 | 100 | <- | Minus |
| 2R | 24048769..24048840 | 23..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:42 Download gff for
UFO01037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19935027..19935382 | 544..903 | 97 | <- | Minus |
| arm_2R | 19935449..19935519 | 473..543 | 100 | <- | Minus |
| arm_2R | 19935589..19935783 | 278..472 | 100 | <- | Minus |
| arm_2R | 19935858..19935973 | 162..277 | 100 | <- | Minus |
| arm_2R | 19936162..19936229 | 94..161 | 100 | <- | Minus |
| arm_2R | 19936292..19936363 | 23..93 | 95 | | Minus |
