UFO01038.5prime Sequence
1209 bp (1049 high quality bases) assembled on 2008-07-03
> UFO01038.5prime
GCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATG
GAATACAAACCCGTGCCCACGGTTAAGGACGCAGCTCCCTTCGACGCCTC
CCAGGACGCCCAGGTGCTGCGGGCGGCGATGAAGGGATTCGGCACCGACG
AGCAGGAAATCATCGACGTGCTCGTCGGCAGGAGCAACCAGCAGAGGCAG
ACGATCAAGGCGGTTTACGAAGCGGAGTTCGAGCGCGACCTGGTGGACGA
TCTTAAGGACGAGCTGGGAGGCAAGTTCGAGGACGTGATCGTGGGTCTAA
TGATGCCACCAGTGGAGTACCTGTGCAAGCAACTGCACGCCGCCATGGCG
GGCATCGGAACCGAGGAGGCCACGCTCGTCGAGATCCTGTGCACCAAGAC
CAACGAGGAGATGGCCCAGATCGTGGCCGTCTACGAGGAGCGCTACCAGC
GCCCGCTGGCCGAGCAGATGTGCAGCGAGACCTCCGGCTTTTTCCGCCGC
CTGCTCACGCTGATCGTGACCGGAGTACGTGACGGACTGGACACGCCCGT
CGACGTCGGTCAGGCCAAGGAGCAGGCCGCCCAGCTCTACTCGGCCGGCG
AGGCCAAGCTGGGAACGGACGAGGAGGTCTTCAACCGGATCATGTCGCAC
GCCAGCTTCCCGCAGCTGCGACTCGTCTTCGAGGAGTACAAGGTGCTCTC
CGGGCAGACCATCGAGCAGGCCATCAAGCACGAGATGTCCGACGAGCTGC
ACGAGGCCATGATGGCCATAGTTGAGTGCGTCCAGTCACCGGCGGCCTTC
TTCGCCAACCGCCTGTACAAGGCCATGAATGGCGCCGGCACCGATGACGC
CACGCTCATCCGCATCATCGTCAGCCGCTCGGAGATCGACCTGGAGACCA
TTAAGCAGGAGTTCGAGCGGATCTACAACCGTACGCTGCACAGCGCCGTG
TGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACAGCCCTACTTGAT
CCGCCGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
TCATATCATAATCATTATTCATAATCATATCACACTAGCTTAGGAGATCT
TGATCATGACTAGGTGCTGCATCTCACCAATAAAACGCCCGGCGCAACGA
CGATCGACATTCGAATGGAGTTGAAGTCATACCTGGAATCTATACCACGG
GAGTTCCAC
UFO01038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB10-RA | 1244 | CG9579-RA | 135..1094 | 48..1005 | 4750 | 99.8 | Plus |
| AnxB10-RB | 1247 | CG9579-RB | 135..1097 | 48..1005 | 4710 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20172305..20173016 | 771..60 | 3560 | 100 | Minus |
| X | 23542271 | X | 20187343..20187594 | 771..520 | 1230 | 99.2 | Minus |
| X | 23542271 | X | 20218115..20218364 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20179468..20179717 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20195077..20195326 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20202793..20203042 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20210463..20210712 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20225850..20226099 | 771..522 | 1220 | 99.2 | Minus |
| X | 23542271 | X | 20172044..20172225 | 950..769 | 910 | 100 | Minus |
| X | 23542271 | X | 20179207..20179388 | 950..769 | 910 | 100 | Minus |
| X | 23542271 | X | 20194812..20194993 | 950..769 | 910 | 100 | Minus |
| X | 23542271 | X | 20202528..20202709 | 950..769 | 910 | 100 | Minus |
| X | 23542271 | X | 20210198..20210379 | 950..769 | 910 | 100 | Minus |
| X | 23542271 | X | 20217854..20218035 | 950..769 | 895 | 99.5 | Minus |
| X | 23542271 | X | 20187082..20187263 | 950..769 | 895 | 99.5 | Minus |
| X | 23542271 | X | 20225589..20225770 | 950..769 | 895 | 99.5 | Minus |
| X | 23542271 | X | 20171603..20171649 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20178766..20178812 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20186641..20186687 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20194371..20194417 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20202087..20202133 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20209757..20209803 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20217413..20217459 | 998..952 | 235 | 100 | Minus |
| X | 23542271 | X | 20225148..20225194 | 998..952 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:14 has no hits.
UFO01038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:53 Download gff for
UFO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnnX-RA | 136..1104 | 40..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:32 Download gff for
UFO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB10-RA | 131..1099 | 40..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:59 Download gff for
UFO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB10-RA | 131..1099 | 40..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:59 Download gff for
UFO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20171590..20171648 | 953..1011 | 93 | <- | Minus |
| X | 20172041..20172222 | 772..952 | 99 | <- | Minus |
| X | 20172305..20173016 | 60..771 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:32 Download gff for
UFO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20065623..20065681 | 953..1011 | 93 | <- | Minus |
| arm_X | 20066074..20066255 | 772..952 | 99 | <- | Minus |
| arm_X | 20066338..20067049 | 60..771 | 100 | <- | Minus |
