UFO01039.5prime Sequence
1202 bp (1024 high quality bases) assembled on 2008-07-03
> UFO01039.5prime
CAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGGACGAC
AGCACTCGAAAAACGTTGAGCAACATTCCGCTGCTGCAGATTCGCGCTGG
TCCGCGCGAAAAGGATGTGTGGGTGCAGCGGCTCAAGGAGGAGTACCAGG
CACTAATTAAGTATGTGGAGAACAACAAACAGTCCGGCAGCGACTGGTTC
CGTCTGGAATCCAACAAGGAGGGCACCAAGTGGTTCGGAAAGTGTTGGTA
CATGCACAACCTGTTAAAGTACGAGTTCGACGTGGAGTTCGACATTCCAG
TGACGTACCCAACCACCGCGCCCGAGATTGCCCTGCCAGAACTTGACGGC
AAGACAGCGAAGATGTACCGTGGTGGCAAGATCTGTCTGACGGATCACTT
TAAGCCACTGTGGGCACGCAATGTTCCCAAGTTTGGGATCGCCCACGCTA
TGGCTCTGGGTCTTGCTCCCTGGCTGGCCGTGGAGATTCCGGATCTCATC
GAGAAGGGAATCATTACGTACAAGGAAAAGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGATTGGCTGAACGAAAACATAT
TCTCAATAAACCCTTAAGGAAATAGCCAGTTTTCCACCGTAACACGCCAA
ATCTAGCTAATATATGTGTAGAACTGCGAATCGTCTGCATCACTCCAGAA
GCGATGAAACGTTCAGATGGCTCATGGAAACGTGTACAAGCTTACATTCC
ATTCACGTCCGCTTCATGCATACGAACTTCGGATAGAAACCTTCTCTCAG
CG
UFO01039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8386-RA | 656 | CG8386-RA | 97..592 | 35..530 | 2465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16007087..16007388 | 461..160 | 1510 | 100 | Minus |
| 2R | 25286936 | 2R | 16007445..16007571 | 161..35 | 620 | 99.2 | Minus |
| 2R | 25286936 | 2R | 16006957..16007025 | 530..462 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:03 has no hits.
UFO01039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:22 Download gff for
UFO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 76..589 | 27..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:09 Download gff for
UFO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 88..601 | 27..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:29 Download gff for
UFO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 88..601 | 27..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:29 Download gff for
UFO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16006957..16007025 | 462..530 | 100 | <- | Minus |
| 2R | 16007087..16007386 | 162..461 | 100 | <- | Minus |
| 2R | 16007445..16007567 | 39..161 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:09 Download gff for
UFO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11894462..11894530 | 462..530 | 100 | <- | Minus |
| arm_2R | 11894592..11894891 | 162..461 | 100 | <- | Minus |
| arm_2R | 11894950..11895072 | 39..161 | 100 | == | Minus |
