UFO01040.5prime Sequence
1199 bp (1027 high quality bases) assembled on 2008-07-03
> UFO01040.5prime
GCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATT
AAACTATTCACGCTTAAGCAGCAGAAGAAAGACGGCGAGCAAAAGGGCAG
TCAGCAGAAGAAAGCGTCCGCCGCCCAGCTGCGCATACAGAAAGATATTA
ACGAACTGAACCTGCCAAACACTTGCGCCACAGACTTTCCCGATCCCAAT
GACTTGCTCAACTTCAAGCTTATCATCTCGCCCGACGAGGGCTTCTACAG
AGACGGGCGCTTCGTGTTCAATTTCCGCGTCGGATCCAACTATCCGCACG
AGCCGCCCAAGGTGAAGTGCGCCACCCAGGTGTACCATCCCAATATTGAC
CTGGATGGCAACGTCTGCCTCAACATTCTGCGCGAGGACTGGAATCCAGT
GCTGAACATCAACTCCATCGTCTATGGCTTGCAGTTTCTATTCTTGGAAC
CCAATCCCGAGGATCCGCTCAACAAGGAGGCGGCCGACGTCCTGCAGACC
AACCGCCGTCAGTTCGAGAACAATGTAAAGAAGGCGATGCGTGGTGGCTG
TGTGGGCGAGACCTACTTCGAGTGCTGTCTGCTCAAGGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAAATATTTGCCCATGTGAAAACGGGGCGAAGAGTGTCATATTGCACG
TTAATCAAACTGTGAACTCACCAGGATGCTGAAACGAAAACATATTCTCA
ATAATCATTAGAAATAGCAGTTCACGTAACACGCCCAATCTGCAATAATG
TGTAGAAACTGCGAATCGTCTGCATTCAACCGAAGCGATAAACGTTCAAT
GCGATGAACGGTTAACAGGTGAACCATTCTAATACACCGCTCAACTGTC
UFO01040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UbcE2M-RC | 1729 | CG7375-RC | 291..833 | 45..587 | 2715 | 100 | Plus |
| UbcE2M-RB | 916 | CG7375-RB | 164..706 | 45..587 | 2715 | 100 | Plus |
| UbcE2M-RA | 913 | CG7375-RA | 161..703 | 45..587 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8197141..8197445 | 447..143 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 8196743..8196884 | 587..446 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 8197522..8197621 | 144..45 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:23 has no hits.
UFO01040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:55 Download gff for
UFO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7375-RA | 160..702 | 45..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:17 Download gff for
UFO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc12-RA | 161..703 | 45..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:16 Download gff for
UFO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcE2M-RA | 161..703 | 45..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:16 Download gff for
UFO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8196743..8196883 | 447..587 | 100 | <- | Minus |
| 3L | 8197142..8197443 | 145..446 | 100 | <- | Minus |
| 3L | 8197522..8197621 | 45..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:17 Download gff for
UFO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8189843..8189983 | 447..587 | 100 | <- | Minus |
| arm_3L | 8190242..8190543 | 145..446 | 100 | <- | Minus |
| arm_3L | 8190622..8190721 | 45..144 | 100 | | Minus |
