UFO01053.5prime Sequence
1213 bp (1061 high quality bases) assembled on 2008-07-03
> UFO01053.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCCAATAAAATCAACCCGAAGCGCCGCGAACCGACAGCAGCAGCAG
CAGGAGCCGGTGCCACGGGAGTGGCCACCAACACGAGCACCTCGACCGGA
TCCTCCAGTGCCGGCAACACGTCCTCGGCCAACACATCCTCGTCGTCCAG
CTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGGGCATGTCCGCCGACT
TGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGACTATGTGCTACCGCCG
ATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGTGTCCTGTCGCTCCAA
GCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGGCGAATATCCGCAACC
TGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTCCCGTGCAAGCACTCC
GGCTACGGATGCACCGCCTCGCTGGTTTACACGGAAAAGACAGAACACGA
GGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGTGCCCGGGCGCCAGCT
GTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAGCATCTGATGATGTCG
CACAAGAGCATCACAACGCTGCAGGGCGAGGACATCGTGTTCCTGGCCAC
CGACATCAACCTGCCCGGCGCCGTCGATTGGGTAATGATGCAGTCCTGCT
TCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAGTACGACGGA
CACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGGGTCGCGCAAGGAAGC
GGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAAACCGACGCCGGCTCA
CCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGCGTCGCTTCCGCAATT
CACAACTCGGACTGCCTGGTGTTCGACACGTCGATTGCGCAATTGTTCGC
CGACATGGCAACCTGGGCATTAACGTGACCATATCTCTGGTCGCAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATATCATATCAT
AATCATATCATATCCACTAGCTAGGAGATCTGTCATGACTAGTGCTGAAT
TCCCACAATAAAAACGCCGGCGCACGAACGTTCTGAACAATCGGAATGCA
GTTCGAAGTCATACTGGATCTATACACCGGGATTCCAGGCGAGCTCTGAA
CTTACCAAATATC
UFO01053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sina-RC | 3124 | CG9949-RC | 830..1771 | 52..992 | 4685 | 99.9 | Plus |
| sina-RB | 2482 | CG9949-RB | 188..1129 | 52..992 | 4685 | 99.9 | Plus |
| sina-RA | 3191 | CG9949-RA | 897..1838 | 52..992 | 4685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16856418..16857359 | 52..992 | 4660 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 22:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 164..51 | 133 | 63 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 84..141 | 126 | 72.1 | Plus |
UFO01053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:56 Download gff for
UFO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RB | 184..1129 | 47..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:29 Download gff for
UFO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 893..1838 | 47..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:36 Download gff for
UFO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 893..1838 | 47..992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:36 Download gff for
UFO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16856399..16857359 | 30..992 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:29 Download gff for
UFO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16849499..16850459 | 30..992 | 98 | == | Plus |
