UFO01054.5prime Sequence
1211 bp (1034 high quality bases) assembled on 2008-07-03
> UFO01054.5prime
GCGGCCGCATAACTACGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGTGCGCGTGCCTAATCGCTAAGATAATTCTATGTAGTTTTCGTTTGTA
TACAATAAGTGCCTTTTATATGTTAACGACGATGTCAGCCAGCAGCAATA
CAAACAGCCTGATCGAGAAGGAGATCGACGACGAGGACATGCTTTCGCCG
ATCAAGTCCAACAACCTGGTGGTGCGGGTCAACCAGGACACGGACGACAA
CCTGCAGGCGCTATTCGACAGCGTCCTGAATCCGGGTGACGCCAAGCGCC
CGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCCCAACTCCTTCTTCACG
CCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCGCCGACTCCACCTACGA
CGCGGGCTCCCAGTCGAGCATCAACATCGGGAACAAGGCGTCCATCGTCC
AGCAGCCAGATGGCCAGTCGCCCATCGCCGCCATCCCCCAGCTCCAGATT
CAGCCGTCTCCCCAGCACAGCCGCCTGGCGATACATCACTCCCGAGCCCG
CAGCAGCCCCGCCTCGCTGCAGCAGAACTACAATGTGCGCGCCCGGAGCG
ACGCAGCAGCAGCCAACAATCCGAATGCCAATCCGAGCAGCCAACAGCAG
CCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCCAAGAGTTCCCCAGCGG
CGCCCCGGCCAGCTCGGCCATTGATCTGGACGCCATGAACACCTGCATGT
CGCAGGACATTCCCATGTCCATGCAGACAGTGCACAAGAAGCAGCGCTCC
TACGACGTCATCAGCCCCATTCAGTTGAACCGCCAACTAGGCGCCTTGCC
GCCGGGATGGGAGCAAGCCAAGACCAATGATGGCCAGATCTACTACTTGA
ATCATACTACAAATCTACGCAGTGGGGGGATCCCAGAATCCAATATCGCC
AGCAGCAGCAAATCTTGATGGGCCGAGCGAATAAAGCAGATGAATCTGGG
CTTAGCGTGCTCGACTGCCCAGAATACTTAGTGTCTTCCTCAGATTGAGA
TATCTTTGCAGTAACTGTCAATGACGCACAGGCATTGTAAATCGCGTCCT
CCACAACTGACGATTGGATGCATAAAATAATGCAGCCTTCTAGACATTCG
TTGCGCGGGAACAGGTATGGTCATATACCATATTCCTATATACGTAGATC
CTAATATCGGA
UFO01054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 171..1248 | 51..1115 | 4970 | 98.2 | Plus |
| yki-RF | 1525 | CG4005-RF | 171..1110 | 51..990 | 4640 | 99.7 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1045 | 51..990 | 4640 | 99.7 | Plus |
| yki-RF | 1525 | CG4005-RF | 1270..1404 | 993..1115 | 340 | 88.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 901..51 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24067166..24067244 | 990..911 | 335 | 97.5 | Minus |
| 2R | 25286936 | 2R | 24066267..24066314 | 1039..992 | 210 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:50 has no hits.
UFO01054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:45 Download gff for
UFO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RA | 166..1237 | 43..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:49 Download gff for
UFO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1237 | 43..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:44 Download gff for
UFO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1237 | 43..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:44 Download gff for
UFO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066261..24066313 | 993..1043 | 92 | <- | Minus |
| 2R | 24067163..24067254 | 902..992 | 95 | <- | Minus |
| 2R | 24067465..24068315 | 51..901 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:49 Download gff for
UFO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953784..19953836 | 993..1043 | 92 | <- | Minus |
| arm_2R | 19954686..19954777 | 902..992 | 95 | <- | Minus |
| arm_2R | 19954988..19955838 | 51..901 | 100 | == | Minus |
