UFO01055.5prime Sequence
1219 bp (994 high quality bases) assembled on 2008-07-03
> UFO01055.5prime
AACAAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGAC
AACGAACAGAAGGCGCTCCAGCTGATGGCCGAGGCGGAGAAGAAGTTGAC
CCAGCAGAAGGGCTTTCTGGGATCGCTGTTCGGAGGGTCCAACAAGGTGG
AGGACGCCATCGAGTGCTACCAGCGGGCGGGCAACATGTTTAAGATGTCC
AAAAACTGGACAAAGGCTGGGGAGTGCTTCTGCGAGGCGGCAACTCTACA
CGCGCGGGCTGGAAGTCGTCACGATGCCGGAACCTGCTACGTAGACGCTT
CCAACTGCTACAAGAAGGTGGACGTGGAGAGCGCCGTCAACTGCCTGATG
AAGTCCATCGACATCTACACGGATATGGGCCGCTTTACGATGGCTGCCAA
ACATCACCAAAGCATCGCCGAGATGTACGAAAGTGATCCCAATAATCTGG
CCAAGTCTATTCAGCACTATGAGCAGGCGGCTGATTACTTCAAGGGTGAA
GAGTCGGTCAGTTCGGCCAACAAGTGCATGTTGAAGGTGGCCCAGTACGC
CGCCCAACTGGAGGATTACGAGAAAGCAATATCCATATACGAGCAGGTGG
CCGCCTCCTCGCTGGAGAGCTCTCTGCTCAAGTACAGTGCCAAGGAGTAC
TTCTTCAGGGCCGCTCTATGCCATCTCAGCGTGGACCTCCTGAACGCCCA
GCATGCCATCGAAAAGTATGCGCAGCAGTACCCAGCATTCCAGGACTCCA
GGGAGTTCAAGCTCATCAAGGTGTTGTGCGAGAATCTAGAGGAACAGAAC
ATCGAGGGATTCACAGAGGCCGTCAAGGACTACGACAGCATCTCCCGGGT
TGGATCAGTGGTACACCACCATCTTGCTGCGGATCAAGAAGGCTGCGGAC
GAGGATCCCGATCTGCGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGGCATAATCATAATCATAATCAAATCATAATCACAC
TAGCCTAAGAGATCCTGGTCATGACTAGTGCTTGGAATCTCACAATAAAA
AAACGCCCGGGCGCAACGAGCGTCTGAACAATTCAGGATGGAGTTCTGAA
GTATACTGATCTATCAACAGGATCAACGAGCCGAATCCAATTACGCCCGA
CATGACACTCATCGCAGAACTGATGTTATCATAAGCATCCTGGCGGACAT
GAAAGCCCACTCCAACAAC
UFO01055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 37..918 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20314982..20315306 | 449..773 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 20314607..20314924 | 133..450 | 1590 | 100 | Plus |
| 3L | 28110227 | 3L | 20315396..20315544 | 769..918 | 700 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20313788..20313884 | 37..133 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:18 has no hits.
UFO01055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:46 Download gff for
UFO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 151..1038 | 32..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:12 Download gff for
UFO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 153..1040 | 32..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:13 Download gff for
UFO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaSnap-RA | 153..1040 | 32..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:13 Download gff for
UFO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20314983..20315303 | 450..770 | 100 | -> | Plus |
| 3L | 20315398..20315547 | 771..922 | 98 | == | Plus |
| 3L | 20313784..20313884 | 32..133 | 98 | -> | Plus |
| 3L | 20314608..20314923 | 134..449 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:12 Download gff for
UFO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20308498..20308647 | 771..922 | 98 | == | Plus |
| arm_3L | 20306884..20306984 | 32..133 | 98 | -> | Plus |
| arm_3L | 20307708..20308023 | 134..449 | 100 | -> | Plus |
| arm_3L | 20308083..20308403 | 450..770 | 100 | -> | Plus |
