UFO01056.5prime Sequence
1212 bp (1049 high quality bases) assembled on 2008-07-03
> UFO01056.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGCACGCGGCTTCGATCATCTATTCAAGTTGCTAATAATCGGCGAT
AGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTCTCGGACGACACATT
CTCAGGCAGTTACATCACCACCATCGGCGTGGACTTTAAGATCCGCACCG
TGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCTGGGACACGGCCGGG
CAGGAGCGCTTCCGGACAATCACCAGCACCTACTACCGCGGCACCCACGG
CGTCATTGTCGTCTACGACGTCACGAACGGCGAATCCTTTGCGAACGTCC
GCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATGTGGTTAAAAAAGTA
TTAGTGGGCAACAAGAACGACGATCCGGACAGGAAGGTGGTCATTACCGA
AGACGCGCAGCGGTTTGCGAAACAAATGGACATCGAGCTATTCGAGACAT
CTGCCAAAGACAACATAAACGTGGAGAACATGTTCTTGTCGATTACGCGA
CAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAACGAGCAGCAGAAGGA
CACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAAGGGTGGGAAGTGCT
GCAGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGCATCAGCA
CCTTGTCGCTTGCGTATAATATTTGCCCATGATGAAAACGGGGCGAAGAA
GTGTCAATATGACCACGTTTAAATCAAACTGTGAAACTCACCCAGGATGC
TGAAACGAAAACAAATTTCTCAATATCGTAGAAATAGCAGCTTCACGTAC
CGCCAATTGCCAATATGTGTAGAACTGCCGGGAATTCGCCTGGAATTCAC
CTACCGAAGTCG
UFO01056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab35-RB | 2024 | CG9575-RB | 926..1528 | 53..655 | 3015 | 100 | Plus |
| Rab35-RD | 3348 | CG9575-RD | 926..1528 | 53..655 | 3015 | 100 | Plus |
| Rab35-RA | 2635 | CG9575-RA | 926..1528 | 53..655 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20157970..20158270 | 404..104 | 1505 | 100 | Minus |
| X | 23542271 | X | 20157586..20157838 | 655..403 | 1265 | 100 | Minus |
| X | 23542271 | X | 20158895..20158947 | 105..53 | 265 | 100 | Minus |
| X | 23542271 | X | 12461504..12461623 | 328..209 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:09 has no hits.
UFO01056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:03 Download gff for
UFO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 884..1505 | 47..666 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:44 Download gff for
UFO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 918..1539 | 47..666 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:58 Download gff for
UFO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 918..1539 | 47..666 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:58 Download gff for
UFO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20157575..20157836 | 405..666 | 98 | <- | Minus |
| X | 20157970..20158269 | 105..404 | 100 | <- | Minus |
| X | 20158896..20158955 | 47..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:44 Download gff for
UFO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20052003..20052302 | 105..404 | 100 | <- | Minus |
| arm_X | 20052929..20052988 | 47..104 | 95 | | Minus |
| arm_X | 20051608..20051869 | 405..666 | 98 | <- | Minus |
