UFO01057.5prime Sequence
1239 bp (1059 high quality bases) assembled on 2008-07-03
> UFO01057.5prime
TGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGCAACTCGCAACCGCGTAATGCAAGCAGAAGCAGAAGGACATCCC
AGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCAGCCAGCGATCACCAC
TACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCAGCAGCAACAACAGCC
GCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGTTCCAGGCCCACACCA
ACCAGCCAACACAGTCGCATCCTCCGGGCGACGAGGAACAGCCTGTACAA
TCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGGCAGCCTTAGCGGAGG
ACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACTCATTTCGTCATCGAA
ACAAGGCCACGCGAAAGAGCTTGACCTCACTTCATGGCTCTCGTCGTGGC
AAGACTCAGTGGCACCGACCTCTGACCAACTCAATCTTCAACTCGCACTT
TAAGGAGACCAGCAAGAACGATCTGTACCGTATCGATCATTTGGTGGCCA
AGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGCAAGAGTGACATTAGT
CAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAAGCTCATCGAAGACAA
CAGTGTACGGCAGATAAAGGACGAGGCGGACATTCAGAAGGTTTGCGGCC
ATCATCCGTTTATCGTGAAGCAAATAGATCTGTGGCAAAACCGCCACAAC
CTCCATATTCTATCGGAGTACGTACCCAACGGCGAGTTGTTCTCAAAAAT
AACTCACTTCTCCATTGATCTGGTTCGTTTATACATTGGCGAGATAGCAC
TTGCCTTGGATTTTCTCCACAACGCTGGGATTATATATCGTGATGCGAAG
CCGGAGAACATCCTGCTAACTGAACAGTTTCACATAAAGCTAACCGACTT
CGGCCTTAGCAAGTGGCTCAAACTGGGGGCAAACACGCGCACATGTGTGG
CACTTTCAAATACATGGCCCCGGAGATTCTGTGCGGGGAACCCTATGGCC
ATGGCGGTGGACTGGTGGGCCTTGGGGCGTTATTGCCTGTCAGATGCTGA
CGCAGAGTCGCCCACATCAACGCCACTACTGGCACGGCCTGAGAGCGTGG
AGCGGAGGACCGGCGGCATTCATCCATGCTCGAATCAGGCTGCTGGAGAA
CAAGTGAACGGCGCACACAGGCGCGAGGAAATTTCTCTT
UFO01057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk17E-RA | 2129 | CG7001-RA | 369..1481 | 52..1160 | 5330 | 99 | Plus |
| Pk17E-RC | 2123 | CG7001-RC | 369..1475 | 52..1160 | 5230 | 98.5 | Plus |
| Pk17E-RB | 1651 | CG7001-RB | 145..1003 | 306..1160 | 4060 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18788832..18789089 | 52..309 | 1290 | 100 | Plus |
| X | 23542271 | X | 18790675..18790893 | 418..636 | 1095 | 100 | Plus |
| X | 23542271 | X | 18791300..18791459 | 859..1017 | 750 | 99.4 | Plus |
| X | 23542271 | X | 18790956..18791081 | 635..760 | 630 | 100 | Plus |
| X | 23542271 | X | 18790503..18790615 | 307..419 | 565 | 100 | Plus |
| X | 23542271 | X | 18791146..18791244 | 761..859 | 495 | 100 | Plus |
| X | 23542271 | X | 18793758..18793845 | 1017..1106 | 350 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 182..339 | 202 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6996 | 31..314 | 200 | 59.4 | Plus |
UFO01057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:18 Download gff for
UFO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 367..1482 | 52..1164 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:08 Download gff for
UFO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1484 | 52..1164 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:57 Download gff for
UFO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1484 | 52..1164 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:57 Download gff for
UFO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18790506..18790615 | 310..419 | 100 | -> | Plus |
| X | 18790677..18790893 | 420..636 | 100 | -> | Plus |
| X | 18790958..18791081 | 637..760 | 100 | -> | Plus |
| X | 18791146..18791244 | 761..859 | 100 | -> | Plus |
| X | 18791301..18791459 | 860..1017 | 99 | -> | Plus |
| X | 18793759..18793847 | 1018..1107 | 96 | -> | Plus |
| X | 18788810..18789089 | 29..309 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:08 Download gff for
UFO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18684539..18684648 | 310..419 | 100 | -> | Plus |
| arm_X | 18684991..18685114 | 637..760 | 100 | -> | Plus |
| arm_X | 18685179..18685277 | 761..859 | 100 | -> | Plus |
| arm_X | 18685334..18685492 | 860..1017 | 99 | -> | Plus |
| arm_X | 18687792..18687880 | 1018..1107 | 96 | -> | Plus |
| arm_X | 18684710..18684926 | 420..636 | 100 | -> | Plus |
| arm_X | 18682843..18683122 | 29..309 | 95 | -> | Plus |
