UFO01059.5prime Sequence
1249 bp (1069 high quality bases) assembled on 2008-07-03
> UFO01059.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCAGAATGCACCAGCATGC
ACATACGCATTCGCACGCGCACAGTTTGCAGCATGCGGAGGAGAAGGAGC
ACAATAGCAATGAGATGACGACCAACTTGTCGTCGACTGGCCGAATTGCG
GCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGGGAGGCGGGGCCAGCGG
AGCACCCACTCCGCCCAAGAGTCTGGCGCTCAATCAGAACCATCACTATG
CACCCGGTTCGGATACATCCGGGGAACAGGAGGAGGAGCTGCTGGACTCG
CGATACGAGTGCGCCATTTGCATCGATTGGCTAAATGAGCCGGTGTTGAC
GTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTCACCGCCTGGATGCAAA
AGAACAATCAATGCTGCCCCATGGACAACAAGCGTCTGTCCGCCGAGCAC
GACATCTTTCCGGACAACTACACGCGCCGCGAGATCGAGCAACTCAAGCG
AGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTGGTTGCCTCGCCCATCG
AACTGCATCGCCATCTGCCCAGTTGTCCCTATCGGCGGCAGCAGGAGCCG
CAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGTGCGATTTTGTGGGCCG
ACCAGAGACCAATCAGTTGGAGGAGCACCTCAAGGCCGACATGCCGCATC
ACATGCAGCTGATGCTGCAGGCATTCCAGCAGACAGCCATTGCCACCTGG
CAGCCACACAAGCCCAGCACAAGTGGCGCCGCCGTGGAGAATGGTCATGG
CCAGCAGCAGCTGCCGCCACCGCCGCAATATGCCAATGGTGTGGATGAGC
AGATTGTGCAAACGATGTACCAGAGAATTGTGGTTTTGGAACAGCGGACA
CGCGAGCAGGAGACGCGACTGGAGAATATGCAAAGCAGCTGCGTCTGGCA
CGCCAGCAGCGCCCGTTGATCCGCGCTACAGCATGGCACGATTGTGGTGG
CGCATCGAGCAGCTGGGCGCCTGATGCTCGCCTGGCGGCCAATGCCACAT
CAGTGTACTCCGCACGAGTGCTACACCCTCGCCGCCATGCTACAAGTTCT
GTGGCGCGGGCCTGAACTTCAGCGGGACGCAATTTTTTCAGCCTTGGCAT
GTGCAACTCTGAGTGCAATTCGGGGACCGGAATTTACTCGCCCTGTGTG
UFO01059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 126..1251 | 51..1173 | 5205 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8156154..8157261 | 1153..51 | 4955 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:45 has no hits.
UFO01059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:02 Download gff for
UFO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf2-RA | 98..1231 | 43..1173 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:36 Download gff for
UFO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..1251 | 43..1173 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:45 Download gff for
UFO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..1251 | 43..1173 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:45 Download gff for
UFO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8156136..8157261 | 51..1173 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:36 Download gff for
UFO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8050169..8051294 | 51..1173 | 98 | == | Minus |
