UFO01060.5prime Sequence
1233 bp (1079 high quality bases) assembled on 2008-07-03
> UFO01060.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGAAAGTGGGTCGACTGCCAAGACGGGCGATTTCTTTTACGGTTGGG
ATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCCAAGAAGTCAGACCTT
TTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCATTACAACTTCCGATG
CGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGGAGGAGGGCAGTGAGC
TGCTGCCGGACAGCTGGAATGATGACGATACCAAGTACTCGCTGCGCTAC
GTGCACGATAAGATGCTGTATTTGCTGCTGGGCCACATCACCGAGGGCTC
CCTGCTGATCAACCTGTTGGACATCAACACTAAGAAGGTATCCAACATCT
GCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAGGGAGGCATCACCACC
ATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTACCGTAGGGAGCTTCT
AGACCCTGTATTCACGGGAAACTCGCGCGAAGTTACCACGCAGACGACCA
ACTCACCACGCCCCATTGGATCGGATCCAGATCCCTTGCGCATCGGCGAG
CCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATTCGAGCCTCGCCCTTT
TGGATTTCCGGACGTTGGACGCGGGGATCTCGATCCACTGGGTCGCGGTG
GTCATGGTAACCTGTTCAGCTTTCCATCACGCCCAAATATGGGCCCGGGA
CCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAACCCGAATAGGCCGGG
ACAGGGTGGAATCAATCCAGATCATATGCGCCCACCAGATTGGAATCCCG
ATTACTACATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCAGATGAGTTCTGAGTCATTA
CTGGATTTATCAACAGGAGTCCAAGCGAGCTCGATAATCAAATTACGGCC
CGCCTGCCACTCATCGCAGTACTGTTTATCCATAGCAATTCTGGCGGAAC
ATGCAGCATTCAAACGGCATGATGACTTGAATCGCAGCGGCATACGATAC
CCTTGTTTGCCCTTGTGCGATATAATAGTTTTG
UFO01060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PI31-RF | 1172 | CG8979-RF | 173..982 | 52..861 | 4050 | 100 | Plus |
| PI31-RD | 1118 | CG8979-RD | 119..928 | 52..861 | 4050 | 100 | Plus |
| PI31-RB | 1203 | CG8979-RB | 204..1013 | 52..861 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11967837..11968231 | 614..220 | 1975 | 100 | Minus |
| 2R | 25286936 | 2R | 11967533..11967780 | 861..614 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 11968284..11968451 | 219..52 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:29 has no hits.
UFO01060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:37 Download gff for
UFO01060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8979-RB | 114..928 | 52..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:02 Download gff for
UFO01060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 204..1018 | 52..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:32 Download gff for
UFO01060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 204..1018 | 52..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:32 Download gff for
UFO01060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11967528..11967779 | 615..869 | 98 | <- | Minus |
| 2R | 11967837..11968231 | 220..614 | 100 | <- | Minus |
| 2R | 11968284..11968451 | 52..219 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:02 Download gff for
UFO01060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7855033..7855284 | 615..869 | 98 | <- | Minus |
| arm_2R | 7855342..7855736 | 220..614 | 100 | <- | Minus |
| arm_2R | 7855789..7855956 | 52..219 | 100 | == | Minus |
