UFO01063.5prime Sequence
1219 bp (1069 high quality bases) assembled on 2008-07-03
> UFO01063.5prime
TCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCAGGAACAAAGTCCCGAGCTGTACGAGGAGGTGAAGCTCTTCCG
TAACGCCCGCGAGCGCGAGAAGTACGACAACATGGCCGATCTATACGCAA
TCATCAACACCATCCAGCAGCTGGAGAAGGCCTACATCCGCGACTGCATT
ACGCCGCAGGAATACACGGCCGCCTGCTCCAAATACCTGGTGCAGTACAA
GGTGGCCTTTAAGCAGGTGCAGTGCGACGAATTCCCCTCGGTGGAGACGT
TCGTTAAGAAATTCCGGCTGGACTGCCCTGCTGCGCTGGAGCGGATCCGC
GAGGACCGACCCATCACCATACGCGACGATAAGGGCAACACCTCCAAATG
CATCGCCGAGATCGTGTCGCTGTTCATCACAATCATGGACAAGCTACGCC
TGCAGATCAACACCATGGACGCCCTACAGCCGGACGTCAAAGACCTGGCT
GACAACATGAATCGCCTGTCCCTCATTCCCGAGGACTTCGACGCCAAGCT
GAAGGTGGAGAAGTGGCTGGGCAGCCTGAACGAGATGCAGGCCTCCGACG
AGTTGAGCGAGGGCCAGGTCCGCCAGTTCCTCTTCGACCTGGAGTCGGCG
TACGCGGACTTCAACAAGCTGCTGCACAGCCAGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAACGGCATG
ATGACCTGAATCGCCAGCGCATCAGCATCTTGTCGCTTGCGTATAATATT
TGCCCATGGTGAAACGGGGCGAGAGTTGTCATATTGCCACGTTTAATCAA
CTGTGAAACTCACCAGGGATGCTGAAACGAAAAACATATTCTCAATAATC
CTAAGAATTGGCAGTTACCGTAAACGCCCATCTTGGCAATATATGTGTGT
GAGAAACTCGCCGCGGAAA
UFO01063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..721 | 50..683 | 3155 | 99.8 | Plus |
| Vps28-RA | 805 | CG12770-RA | 88..721 | 50..683 | 3155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079321..8079954 | 683..50 | 3155 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:24 has no hits.
UFO01063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:09 Download gff for
UFO01063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 78..725 | 44..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:43 Download gff for
UFO01063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 44..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:23 Download gff for
UFO01063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 44..696 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:23 Download gff for
UFO01063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079311..8079958 | 44..696 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:43 Download gff for
UFO01063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966816..3967463 | 44..696 | 98 | | Minus |
