UFO01064.5prime Sequence
1200 bp (1011 high quality bases) assembled on 2008-07-03
> UFO01064.5prime
AACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGACGCGCG
ATGAGAAACTGCCACTTAAACAGGCGGAGGTCTCCATCCAAAGGTTTCAG
GATGTGGCGGTGCCCCACCATCTGAGCCTACTGAAAAACCATCGCAGCAA
TATAGAAAAAAGCCTGGCGCTCGGCGACTGGCAAAAAATCAAAAAGGAGG
AACTCAATGCTATGAGGGTCATTAAGCAGATCAAGAATCTACTTCTGGAA
ATGGATGCACTGCGAGAAAAAGTACGGGAGGAGGATCTGGAACGTTTCGA
CGACCTAATGAAACCTGGCAGGGATACTGCCTTCGCTGGCATGAAGGAAT
TTGCGGAGCTCCAACTCAAATCACCCACCTCCACTTTGAGTTCTCAGTAC
GACGACGATCTGGACAATCAGCCACAGGAGGTGGATTTGAACAGTCTACC
CGCACACCGCCACATGCCCCAGCTGCAACTCAATTTCCAGCTGGAGGAAC
ACCAATTGGCGCAGAGGCAAGCCTGCCTGGATCAGATGGAGAACCTGCAA
CAGGAGATCTACGATCTGCACGGGATGTTCCAGGGAATGCGTCAACTGAC
TGCAGAGCAATCAGTGGCGGTGGAAAAGATAGCAGACAATGCGGAGGAAG
CTCTGGAGAATGTCCAGCAGGGCGAATTGAATCTGCGCCGGGCGCTCACC
TACAAGAAGGCCATGTACCCCGTAGTCGGAGCTCTTCTGGGCACCTGTGT
GGGAGGACCCATTGGTCTGGTGGCGGGCATGAAAGCTGGAGGATTGGCGG
CAGTAGGATGTGGCATCCTCGGCTTCACCGGTGGCTCTGTGCTAAAGGCC
AATCCCAATGTAATGCATGGCAACATCGAGGAGGAGCAGTGGAACCGGAT
AGCGAGTCAACTGAGAGACTGGAGCTAAAAAGAGAAGCCAGAGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATATC
ATAATCATAATCATAATCACACTAGCTAGAGATCTGGTCATGACTAGTGC
TTGATCCCACCATAAAAACGCCGGCGCACGGACGTCTGACATCGATGAGT
CCTGAGTCATACTGAATCTATCACAGGATTCAAGCGAACCGATTCATAGC
CGGCCTGTGCCACTATCAAAACTGTTGAATCATAAGCATTCGCCGCACAT
UFO01064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx17-RB | 1566 | CG7452-RB | 341..1242 | 41..942 | 4450 | 99.7 | Plus |
| Syx17-RA | 1566 | CG7452-RA | 341..1242 | 41..942 | 4450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4404258..4404844 | 356..942 | 2825 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4403950..4404197 | 109..356 | 1240 | 100 | Plus |
| 3L | 28110227 | 3L | 4403827..4403897 | 41..111 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:44 has no hits.
UFO01064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:30 Download gff for
UFO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx17-RA | 312..1229 | 26..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:40 Download gff for
UFO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx17-RA | 325..1242 | 26..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:05 Download gff for
UFO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx17-RA | 325..1242 | 26..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:05 Download gff for
UFO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4403811..4403895 | 26..109 | 94 | -> | Plus |
| 3L | 4403951..4404197 | 110..356 | 100 | -> | Plus |
| 3L | 4404259..4404844 | 357..942 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:40 Download gff for
UFO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4403811..4403895 | 26..109 | 94 | -> | Plus |
| arm_3L | 4403951..4404197 | 110..356 | 100 | -> | Plus |
| arm_3L | 4404259..4404844 | 357..942 | 99 | == | Plus |
