UFO01070.5prime Sequence
1253 bp (1065 high quality bases) assembled on 2008-07-03
> UFO01070.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGAGGAACCGAAAAGTGTACCCACAGCGGAGCTTCCCAGCACATCAAC
CGGGGCATCGTCGTCCTCATCGACTTTGTCCAACAACGTGAGCTACGACA
AGATAGCCTGGACTCGGGATATCACAGAACCCTTGGCTGAGGAGTCATCT
ACAAGTCAATTGCGCCCGCTGGGTACCTCGATTCCAACCAATTCGACGGC
ATCGGAACTGAAGAAGTCCAACACTTCGTATTCCTTTACTGGAGACTATC
TATCTGGTGGCAATAAGGCCGATCTGAAGGGTGGCTATCCATTCGGCGGC
ACCGATACGGACACAAAAGCCAACGAAAAGGACAAGGAGAAGGAACATAC
CGCAGACGACTCACTCTACGAGTGCAACATATGCCTGGACACCGCCAAGG
ATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTGCTGGCCGTGCCTGCAT
CAGTGGCTCCTGACGCGTCCCAATCGCAAACTCTGTCCCGTTTGTAAGGC
TGCCGTTGATAAGGATAAGGTCATACCGCTGTACGGAAGAAATAGTACAC
ACCAGGAAGATCCACGTAACAAAGTTCCACCACGCCCCGCTGGACAACGT
ACAGAACCAGATCCTGTTCCCGGGTTCCCTGGATTCGGATTCGGCGACGG
ATTTCACATGTCTTTCGGTATTGGAGCTTTTCCTTTCGGGTTCATAACAT
CTACGCTCAACTTTGGCGAACCACGTCCACCTGCTGCTAATCGGGGAACA
AGGCAATACGAGGATGAACAGACCCTGTCCAAGCTGTTTTCGTATTTGGC
CGTTGTGTGGATATTGTGGCTGTTCTATGCAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGAT
TCCTCACCATAAAAAACGCCCGCCGGCAACCGACGTCTGAACAATCCAGA
TGGAGTCCTGAGTCATACTGATTTATCAACAGGAGTCCAAGGCGGGCCTC
GAATATCAATACGCCCCCGCCCTGCCCCTCATCGCCAGTACTGTTGTTAT
TTCATTAGCATTCTGCGCCACTTGAAGCATCAATCGCCATATAGACCTTG
ATTCGCCAGCGGAACAGAGCACCCTTGGTGTCGCCCTTGTCGCATATATA
AAT
UFO01070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8974-RE | 1317 | CG8974-RE | 103..934 | 50..881 | 4160 | 100 | Plus |
| CG8974-RD | 1280 | CG8974-RD | 66..897 | 50..881 | 4160 | 100 | Plus |
| CG8974-RB | 1389 | CG8974-RB | 175..1006 | 50..881 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15794497..15795063 | 616..50 | 2835 | 100 | Minus |
| X | 23542271 | X | 15797667..15798233 | 616..50 | 2820 | 99.8 | Minus |
| X | 23542271 | X | 15794267..15794434 | 783..616 | 840 | 100 | Minus |
| X | 23542271 | X | 15797437..15797604 | 783..616 | 795 | 98.2 | Minus |
| X | 23542271 | X | 15794104..15794202 | 881..783 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 15121665..15121843 | 415..593 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:48 has no hits.
UFO01070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:35 Download gff for
UFO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-RB | 195..1040 | 43..892 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:15 Download gff for
UFO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-RB | 170..1015 | 43..892 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:18 Download gff for
UFO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-RB | 170..1015 | 43..892 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:18 Download gff for
UFO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15794095..15794201 | 784..892 | 95 | <- | Minus |
| X | 15794267..15794433 | 617..783 | 100 | <- | Minus |
| X | 15794497..15795068 | 43..616 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:15 Download gff for
UFO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15688128..15688234 | 784..892 | 95 | <- | Minus |
| arm_X | 15688300..15688466 | 617..783 | 100 | <- | Minus |
| arm_X | 15688530..15689101 | 43..616 | 99 | | Minus |
